Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0030 and Dsui_0031 are separated by 129 nucleotides Dsui_0031 and Dsui_0032 are separated by 91 nucleotides Dsui_0032 and Dsui_0033 are separated by 90 nucleotides
Dsui_0030: Dsui_0030 - FtsH-interacting integral membrane protein, at 27,028 to 27,720
_0030
Dsui_0031: Dsui_0031 - cation/cationic drug transporter, at 27,850 to 28,173
_0031
Dsui_0032: Dsui_0032 - NAD-dependent protein deacetylase, SIR2 family, at 28,265 to 29,095
_0032
Dsui_0033: Dsui_0033 - Zn-dependent protease with chaperone function, at 29,186 to 30,007
_0033
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.306 kb on + strand at 27.343 kb on + strand at 27.385 kb on + strand at 27.750 kb on + strand at 27.840 kb on + strand at 27.964 kb on + strand, within Dsui_0031 at 28.036 kb on + strand, within Dsui_0031 at 28.078 kb on + strand, within Dsui_0031 at 28.106 kb on - strand at 28.159 kb on - strand at 28.225 kb on + strand at 28.273 kb on + strand at 28.284 kb on + strand at 28.326 kb on - strand at 28.350 kb on + strand at 28.398 kb on + strand, within Dsui_0032 at 28.474 kb on + strand, within Dsui_0032 at 28.477 kb on - strand at 28.685 kb on - strand at 28.694 kb on + strand at 28.893 kb on + strand, within Dsui_0032 at 28.967 kb on + strand at 28.975 kb on - strand, within Dsui_0032 at 28.999 kb on + strand at 29.007 kb on - strand, within Dsui_0032 at 29.007 kb on - strand at 29.024 kb on - strand at 29.107 kb on - strand at 29.107 kb on - strand at 29.157 kb on - strand at 29.280 kb on - strand at 29.299 kb on + strand, within Dsui_0033 at 29.458 kb on + strand, within Dsui_0033 at 29.507 kb on - strand at 29.600 kb on + strand, within Dsui_0033 at 29.718 kb on + strand, within Dsui_0033 at 29.864 kb on + strand, within Dsui_0033 at 29.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 27,306 + +0.4 27,343 + -1.2 27,385 + +0.4 27,750 + -0.5 27,840 + -0.1 27,964 + Dsui_0031 0.35 -1.2 28,036 + Dsui_0031 0.57 -0.6 28,078 + Dsui_0031 0.70 -1.9 28,106 - -1.2 28,159 - +0.4 28,225 + -0.6 28,273 + -0.6 28,284 + -1.2 28,326 - +0.4 28,350 + +0.4 28,398 + Dsui_0032 0.16 +0.4 28,474 + Dsui_0032 0.25 -1.2 28,477 - +0.4 28,685 - -1.2 28,694 + +0.4 28,893 + Dsui_0032 0.76 +0.4 28,967 + +0.4 28,975 - Dsui_0032 0.85 -1.6 28,999 + -0.6 29,007 - Dsui_0032 0.89 -1.6 29,007 - +0.4 29,024 - +0.4 29,107 - -0.6 29,107 - +0.4 29,157 - -1.6 29,280 - -1.2 29,299 + Dsui_0033 0.14 -1.2 29,458 + Dsui_0033 0.33 +1.4 29,507 - +0.4 29,600 + Dsui_0033 0.50 -2.9 29,718 + Dsui_0033 0.65 -3.1 29,864 + Dsui_0033 0.82 -3.3 29,951 - -0.6
Or see this region's nucleotide sequence