Experiment: ALP with Zinc 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0014 and Dsui_0015 are separated by 134 nucleotides Dsui_0015 and Dsui_0016 are separated by 39 nucleotides
Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377
_0014
Dsui_0015: Dsui_0015 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 13,512 to 13,943
_0015
Dsui_0016: Dsui_0016 - transcriptional regulator, at 13,983 to 14,891
_0016
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 12.604 kb on - strand at 12.609 kb on - strand at 12.711 kb on - strand at 12.781 kb on - strand at 12.781 kb on - strand at 12.929 kb on + strand, within Dsui_0014 at 12.935 kb on + strand, within Dsui_0014 at 12.950 kb on + strand, within Dsui_0014 at 12.954 kb on - strand, within Dsui_0014 at 12.954 kb on - strand at 13.011 kb on + strand, within Dsui_0014 at 13.040 kb on + strand, within Dsui_0014 at 13.040 kb on + strand, within Dsui_0014 at 13.048 kb on - strand at 13.048 kb on - strand, within Dsui_0014 at 13.127 kb on - strand at 13.223 kb on - strand, within Dsui_0014 at 13.225 kb on - strand at 13.238 kb on + strand, within Dsui_0014 at 13.253 kb on + strand, within Dsui_0014 at 13.289 kb on + strand, within Dsui_0014 at 13.297 kb on - strand, within Dsui_0014 at 13.308 kb on - strand, within Dsui_0014 at 13.357 kb on - strand at 13.457 kb on + strand at 13.510 kb on - strand at 13.522 kb on - strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.598 kb on - strand, within Dsui_0015 at 13.609 kb on + strand, within Dsui_0015 at 13.678 kb on + strand, within Dsui_0015 at 13.678 kb on + strand at 13.696 kb on + strand at 13.786 kb on + strand, within Dsui_0015 at 13.786 kb on - strand at 13.853 kb on - strand at 13.935 kb on + strand at 14.245 kb on - strand, within Dsui_0016 at 14.266 kb on - strand, within Dsui_0016 at 14.346 kb on + strand at 14.370 kb on - strand, within Dsui_0016 at 14.396 kb on + strand, within Dsui_0016 at 14.423 kb on - strand, within Dsui_0016 at 14.521 kb on - strand, within Dsui_0016 at 14.539 kb on - strand, within Dsui_0016 at 14.606 kb on + strand, within Dsui_0016 at 14.673 kb on + strand, within Dsui_0016 at 14.708 kb on + strand, within Dsui_0016 at 14.769 kb on + strand at 14.776 kb on - strand, within Dsui_0016 at 14.776 kb on - strand, within Dsui_0016 at 14.866 kb on + strand at 14.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 1 mM remove 12,604 - +0.4 12,609 - -2.4 12,711 - -0.6 12,781 - -0.6 12,781 - -0.6 12,929 + Dsui_0014 0.27 -0.8 12,935 + Dsui_0014 0.28 -1.0 12,950 + Dsui_0014 0.30 -0.2 12,954 - Dsui_0014 0.31 -1.2 12,954 - +0.4 13,011 + Dsui_0014 0.40 -1.8 13,040 + Dsui_0014 0.45 -1.1 13,040 + Dsui_0014 0.45 -0.7 13,048 - -0.6 13,048 - Dsui_0014 0.46 -1.6 13,127 - +0.4 13,223 - Dsui_0014 0.75 +0.4 13,225 - +0.4 13,238 + Dsui_0014 0.77 -1.1 13,253 + Dsui_0014 0.80 -1.1 13,289 + Dsui_0014 0.86 -0.6 13,297 - Dsui_0014 0.87 -1.9 13,308 - Dsui_0014 0.89 -0.6 13,357 - -0.6 13,457 + -0.6 13,510 - +0.4 13,522 - -1.2 13,525 + -2.6 13,525 + -0.6 13,598 - Dsui_0015 0.20 -0.6 13,609 + Dsui_0015 0.22 -1.2 13,678 + Dsui_0015 0.38 -1.6 13,678 + +0.4 13,696 + +0.4 13,786 + Dsui_0015 0.63 -1.2 13,786 - -0.6 13,853 - +0.4 13,935 + -1.6 14,245 - Dsui_0016 0.29 -0.3 14,266 - Dsui_0016 0.31 -0.7 14,346 + -0.6 14,370 - Dsui_0016 0.43 -0.3 14,396 + Dsui_0016 0.45 -1.6 14,423 - Dsui_0016 0.48 -0.4 14,521 - Dsui_0016 0.59 -0.1 14,539 - Dsui_0016 0.61 -0.1 14,606 + Dsui_0016 0.69 -0.6 14,673 + Dsui_0016 0.76 -1.9 14,708 + Dsui_0016 0.80 -0.6 14,769 + +0.4 14,776 - Dsui_0016 0.87 -0.8 14,776 - Dsui_0016 0.87 -0.3 14,866 + -0.6 14,866 + +0.4
Or see this region's nucleotide sequence