Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12800

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12790 and BWI76_RS12795 are separated by 149 nucleotidesBWI76_RS12795 and BWI76_RS12800 are separated by 195 nucleotidesBWI76_RS12800 and BWI76_RS12805 overlap by 1 nucleotidesBWI76_RS12805 and BWI76_RS12810 are separated by 7 nucleotidesBWI76_RS12810 and BWI76_RS12815 are separated by 0 nucleotides BWI76_RS12790: BWI76_RS12790 - lactate dehydrogenase, at 2,665,125 to 2,666,114 _RS12790 BWI76_RS12795: BWI76_RS12795 - DedA family protein, at 2,666,264 to 2,666,761 _RS12795 BWI76_RS12800: BWI76_RS12800 - hypothetical protein, at 2,666,957 to 2,669,596 _RS12800 BWI76_RS12805: BWI76_RS12805 - YnbE family lipoprotein, at 2,669,596 to 2,669,781 _RS12805 BWI76_RS12810: BWI76_RS12810 - hypothetical protein, at 2,669,789 to 2,670,112 _RS12810 BWI76_RS12815: BWI76_RS12815 - transcriptional regulator FeaR, at 2,670,113 to 2,671,021 _RS12815 Position (kb) 2666 2667 2668 2669 2670Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2666.276 kb on + strandat 2666.481 kb on - strand, within BWI76_RS12795at 2666.612 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.640 kb on - strand, within BWI76_RS12795at 2666.794 kb on - strandat 2666.968 kb on + strandat 2667.125 kb on - strandat 2667.276 kb on - strand, within BWI76_RS12800at 2667.594 kb on - strand, within BWI76_RS12800at 2667.719 kb on + strand, within BWI76_RS12800at 2668.310 kb on - strand, within BWI76_RS12800at 2668.654 kb on - strand, within BWI76_RS12800at 2668.975 kb on + strand, within BWI76_RS12800at 2669.010 kb on + strand, within BWI76_RS12800at 2669.147 kb on - strand, within BWI76_RS12800at 2669.173 kb on + strand, within BWI76_RS12800at 2669.337 kb on + strandat 2669.345 kb on - strandat 2670.529 kb on + strand, within BWI76_RS12815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,666,276 + -0.5
2,666,481 - BWI76_RS12795 0.44 +0.4
2,666,612 - BWI76_RS12795 0.70 -0.2
2,666,640 - BWI76_RS12795 0.76 +0.0
2,666,640 - BWI76_RS12795 0.76 +0.4
2,666,640 - BWI76_RS12795 0.76 +0.2
2,666,640 - BWI76_RS12795 0.76 -0.4
2,666,640 - BWI76_RS12795 0.76 +0.2
2,666,794 - -0.3
2,666,968 + +0.6
2,667,125 - +0.2
2,667,276 - BWI76_RS12800 0.12 -0.2
2,667,594 - BWI76_RS12800 0.24 -1.2
2,667,719 + BWI76_RS12800 0.29 -0.4
2,668,310 - BWI76_RS12800 0.51 -0.1
2,668,654 - BWI76_RS12800 0.64 +8.1
2,668,975 + BWI76_RS12800 0.76 -1.1
2,669,010 + BWI76_RS12800 0.78 +0.1
2,669,147 - BWI76_RS12800 0.83 -0.7
2,669,173 + BWI76_RS12800 0.84 +1.1
2,669,337 + -0.0
2,669,345 - +0.2
2,670,529 + BWI76_RS12815 0.46 -0.5

Or see this region's nucleotide sequence