Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28255

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28250 and AZOBR_RS28255 are separated by 70 nucleotidesAZOBR_RS28255 and AZOBR_RS28260 are separated by 22 nucleotides AZOBR_RS28250: AZOBR_RS28250 - hypothetical protein, at 507,449 to 508,501 _RS28250 AZOBR_RS28255: AZOBR_RS28255 - hypothetical protein, at 508,572 to 509,240 _RS28255 AZOBR_RS28260: AZOBR_RS28260 - putative Sec-independent protein translocase protein TatA/E (fragment), at 509,263 to 509,451 _RS28260 Position (kb) 508 509 510Strain fitness (log2 ratio) -1 0 1at 507.775 kb on - strand, within AZOBR_RS28250at 509.159 kb on - strand, within AZOBR_RS28255at 509.159 kb on - strand, within AZOBR_RS28255at 509.919 kb on - strandat 509.919 kb on - strandat 509.919 kb on - strandat 510.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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507,775 - AZOBR_RS28250 0.31 +0.8
509,159 - AZOBR_RS28255 0.88 +0.6
509,159 - AZOBR_RS28255 0.88 -0.2
509,919 - +0.7
509,919 - -0.1
509,919 - +1.3
510,086 + +0.7

Or see this region's nucleotide sequence