Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23085

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23080 and AZOBR_RS23085 overlap by 4 nucleotidesAZOBR_RS23085 and AZOBR_RS23090 are separated by 192 nucleotides AZOBR_RS23080: AZOBR_RS23080 - ribulose 1 5-bisphosphate carboxylase, at 194,572 to 195,843 _RS23080 AZOBR_RS23085: AZOBR_RS23085 - type III effector Hrp-dependent outer protein, at 195,840 to 197,147 _RS23085 AZOBR_RS23090: AZOBR_RS23090 - Crp/Fnr family transcription regulator, at 197,340 to 198,071 _RS23090 Position (kb) 195 196 197 198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 195.455 kb on - strand, within AZOBR_RS23080at 196.107 kb on + strand, within AZOBR_RS23085at 196.107 kb on + strand, within AZOBR_RS23085at 196.108 kb on - strand, within AZOBR_RS23085at 196.108 kb on - strand, within AZOBR_RS23085at 196.402 kb on - strand, within AZOBR_RS23085at 196.750 kb on + strand, within AZOBR_RS23085at 196.941 kb on - strand, within AZOBR_RS23085at 197.204 kb on + strandat 197.205 kb on - strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.214 kb on + strandat 197.236 kb on + strandat 197.237 kb on - strandat 197.237 kb on - strandat 197.258 kb on + strandat 197.273 kb on - strandat 197.273 kb on - strandat 197.665 kb on - strand, within AZOBR_RS23090at 197.670 kb on + strand, within AZOBR_RS23090at 197.671 kb on - strand, within AZOBR_RS23090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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195,455 - AZOBR_RS23080 0.69 +0.8
196,107 + AZOBR_RS23085 0.20 +0.2
196,107 + AZOBR_RS23085 0.20 +1.1
196,108 - AZOBR_RS23085 0.20 +0.4
196,108 - AZOBR_RS23085 0.20 +0.6
196,402 - AZOBR_RS23085 0.43 +0.2
196,750 + AZOBR_RS23085 0.70 +0.1
196,941 - AZOBR_RS23085 0.84 +0.7
197,204 + -0.0
197,205 - +0.8
197,214 + -0.2
197,214 + -2.1
197,214 + -2.5
197,214 + -2.5
197,236 + -1.4
197,237 - -4.0
197,237 - -0.5
197,258 + -2.0
197,273 - -1.5
197,273 - -0.6
197,665 - AZOBR_RS23090 0.44 -1.3
197,670 + AZOBR_RS23090 0.45 -2.1
197,671 - AZOBR_RS23090 0.45 -0.7

Or see this region's nucleotide sequence