Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15630

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15625 and AZOBR_RS15630 are separated by 396 nucleotidesAZOBR_RS15630 and AZOBR_RS15635 are separated by 415 nucleotidesAZOBR_RS15635 and AZOBR_RS15640 are separated by 162 nucleotides AZOBR_RS15625: AZOBR_RS15625 - deoxycytidine triphosphate deaminase, at 262,249 to 262,833 _RS15625 AZOBR_RS15630: AZOBR_RS15630 - hypothetical protein, at 263,230 to 263,463 _RS15630 AZOBR_RS15635: AZOBR_RS15635 - hypothetical protein, at 263,879 to 264,283 _RS15635 AZOBR_RS15640: AZOBR_RS15640 - membrane protein, at 264,446 to 265,195 _RS15640 Position (kb) 263 264Strain fitness (log2 ratio) -1 0 1at 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 263.200 kb on + strandat 263.830 kb on + strandat 264.113 kb on + strand, within AZOBR_RS15635at 264.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
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262,942 - +0.9
262,942 - +0.6
262,942 - +0.1
262,942 - +0.1
262,942 - +0.2
262,942 - +0.6
263,200 + +0.8
263,830 + +0.6
264,113 + AZOBR_RS15635 0.58 -0.4
264,412 - +0.7

Or see this region's nucleotide sequence