Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07010

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07005 and AZOBR_RS07010 are separated by 493 nucleotidesAZOBR_RS07010 and AZOBR_RS07015 are separated by 255 nucleotides AZOBR_RS07005: AZOBR_RS07005 - hypothetical protein, at 1,480,650 to 1,481,156 _RS07005 AZOBR_RS07010: AZOBR_RS07010 - diguanylate cyclase, at 1,481,650 to 1,484,055 _RS07010 AZOBR_RS07015: AZOBR_RS07015 - short-chain dehydrogenase, at 1,484,311 to 1,485,297 _RS07015 Position (kb) 1481 1482 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1at 1480.914 kb on + strand, within AZOBR_RS07005at 1481.190 kb on - strandat 1481.563 kb on + strandat 1481.563 kb on + strandat 1481.564 kb on - strandat 1481.564 kb on - strandat 1481.564 kb on - strandat 1481.564 kb on - strandat 1481.998 kb on + strand, within AZOBR_RS07010at 1482.161 kb on - strand, within AZOBR_RS07010at 1482.782 kb on - strand, within AZOBR_RS07010at 1482.782 kb on - strand, within AZOBR_RS07010at 1482.793 kb on + strand, within AZOBR_RS07010at 1482.794 kb on - strand, within AZOBR_RS07010at 1483.009 kb on - strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.231 kb on + strand, within AZOBR_RS07010at 1483.232 kb on - strand, within AZOBR_RS07010at 1483.232 kb on - strand, within AZOBR_RS07010at 1483.804 kb on + strand, within AZOBR_RS07010at 1483.804 kb on + strand, within AZOBR_RS07010at 1483.804 kb on + strand, within AZOBR_RS07010at 1483.805 kb on - strand, within AZOBR_RS07010at 1484.008 kb on + strandat 1484.008 kb on + strandat 1484.009 kb on - strandat 1484.009 kb on - strandat 1484.009 kb on - strandat 1484.588 kb on + strand, within AZOBR_RS07015at 1484.589 kb on - strand, within AZOBR_RS07015at 1484.709 kb on - strand, within AZOBR_RS07015at 1484.709 kb on - strand, within AZOBR_RS07015at 1484.825 kb on + strand, within AZOBR_RS07015at 1484.826 kb on - strand, within AZOBR_RS07015at 1484.942 kb on + strand, within AZOBR_RS07015at 1484.942 kb on + strand, within AZOBR_RS07015at 1484.943 kb on - strand, within AZOBR_RS07015at 1485.044 kb on + strand, within AZOBR_RS07015at 1485.045 kb on - strand, within AZOBR_RS07015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
remove
1,480,914 + AZOBR_RS07005 0.52 +0.9
1,481,190 - +0.4
1,481,563 + +0.4
1,481,563 + +0.6
1,481,564 - -0.3
1,481,564 - +0.4
1,481,564 - +0.8
1,481,564 - +0.4
1,481,998 + AZOBR_RS07010 0.14 -0.1
1,482,161 - AZOBR_RS07010 0.21 +1.4
1,482,782 - AZOBR_RS07010 0.47 +0.2
1,482,782 - AZOBR_RS07010 0.47 +0.6
1,482,793 + AZOBR_RS07010 0.48 +0.4
1,482,794 - AZOBR_RS07010 0.48 -0.7
1,483,009 - AZOBR_RS07010 0.56 -0.6
1,483,231 + AZOBR_RS07010 0.66 +0.9
1,483,231 + AZOBR_RS07010 0.66 -0.3
1,483,231 + AZOBR_RS07010 0.66 +0.4
1,483,231 + AZOBR_RS07010 0.66 +0.9
1,483,231 + AZOBR_RS07010 0.66 +0.9
1,483,231 + AZOBR_RS07010 0.66 +1.0
1,483,232 - AZOBR_RS07010 0.66 +0.7
1,483,232 - AZOBR_RS07010 0.66 +0.2
1,483,804 + AZOBR_RS07010 0.90 +0.5
1,483,804 + AZOBR_RS07010 0.90 +0.1
1,483,804 + AZOBR_RS07010 0.90 +0.4
1,483,805 - AZOBR_RS07010 0.90 +0.9
1,484,008 + -0.0
1,484,008 + +0.4
1,484,009 - +0.3
1,484,009 - +0.4
1,484,009 - +1.4
1,484,588 + AZOBR_RS07015 0.28 -0.2
1,484,589 - AZOBR_RS07015 0.28 -0.3
1,484,709 - AZOBR_RS07015 0.40 -2.6
1,484,709 - AZOBR_RS07015 0.40 +1.0
1,484,825 + AZOBR_RS07015 0.52 -2.2
1,484,826 - AZOBR_RS07015 0.52 -1.2
1,484,942 + AZOBR_RS07015 0.64 +1.0
1,484,942 + AZOBR_RS07015 0.64 +0.2
1,484,943 - AZOBR_RS07015 0.64 +0.2
1,485,044 + AZOBR_RS07015 0.74 -0.9
1,485,045 - AZOBR_RS07015 0.74 -0.4

Or see this region's nucleotide sequence