Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24550

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24540 and AO353_24545 are separated by 101 nucleotidesAO353_24545 and AO353_24550 are separated by 255 nucleotidesAO353_24550 and AO353_24555 are separated by 39 nucleotidesAO353_24555 and AO353_24560 are separated by 120 nucleotides AO353_24540: AO353_24540 - hypothetical protein, at 5,393,758 to 5,394,075 _24540 AO353_24545: AO353_24545 - hypothetical protein, at 5,394,177 to 5,394,536 _24545 AO353_24550: AO353_24550 - hypothetical protein, at 5,394,792 to 5,394,983 _24550 AO353_24555: AO353_24555 - hypothetical protein, at 5,395,023 to 5,395,541 _24555 AO353_24560: AO353_24560 - transcriptional regulator, at 5,395,662 to 5,395,970 _24560 Position (kb) 5394 5395Strain fitness (log2 ratio) -3 -2 -1 0 1at 5393.819 kb on + strand, within AO353_24540at 5393.819 kb on + strand, within AO353_24540at 5393.819 kb on + strand, within AO353_24540at 5393.820 kb on - strand, within AO353_24540at 5393.879 kb on + strand, within AO353_24540at 5393.879 kb on + strand, within AO353_24540at 5393.880 kb on - strand, within AO353_24540at 5393.951 kb on + strand, within AO353_24540at 5394.001 kb on + strand, within AO353_24540at 5394.019 kb on + strand, within AO353_24540at 5394.019 kb on + strand, within AO353_24540at 5394.200 kb on + strandat 5394.200 kb on + strandat 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.229 kb on - strand, within AO353_24545at 5394.299 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.396 kb on + strand, within AO353_24545at 5394.406 kb on + strand, within AO353_24545at 5394.406 kb on + strand, within AO353_24545at 5394.407 kb on - strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strandat 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.536 kb on + strandat 5394.536 kb on + strandat 5394.537 kb on - strandat 5394.580 kb on + strandat 5394.580 kb on + strandat 5394.581 kb on - strandat 5394.581 kb on - strandat 5394.581 kb on - strandat 5394.581 kb on - strandat 5394.822 kb on + strand, within AO353_24550at 5394.823 kb on - strand, within AO353_24550at 5394.835 kb on - strand, within AO353_24550at 5394.844 kb on + strand, within AO353_24550at 5394.880 kb on + strand, within AO353_24550at 5394.881 kb on - strand, within AO353_24550at 5394.894 kb on + strand, within AO353_24550at 5394.976 kb on + strandat 5394.976 kb on + strandat 5394.976 kb on + strandat 5394.977 kb on - strandat 5394.977 kb on - strandat 5394.977 kb on - strandat 5395.024 kb on + strandat 5395.024 kb on + strandat 5395.025 kb on - strandat 5395.064 kb on - strandat 5395.109 kb on + strand, within AO353_24555at 5395.109 kb on + strand, within AO353_24555at 5395.110 kb on - strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.117 kb on + strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.118 kb on - strand, within AO353_24555at 5395.162 kb on + strand, within AO353_24555at 5395.163 kb on - strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.213 kb on + strand, within AO353_24555at 5395.230 kb on - strand, within AO353_24555at 5395.230 kb on - strand, within AO353_24555at 5395.369 kb on + strand, within AO353_24555at 5395.369 kb on + strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.370 kb on - strand, within AO353_24555at 5395.468 kb on + strand, within AO353_24555at 5395.469 kb on - strand, within AO353_24555at 5395.469 kb on - strandat 5395.469 kb on - strand, within AO353_24555at 5395.469 kb on - strand, within AO353_24555at 5395.522 kb on - strandat 5395.581 kb on + strandat 5395.597 kb on + strandat 5395.604 kb on + strandat 5395.667 kb on + strandat 5395.667 kb on + strandat 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.702 kb on + strand, within AO353_24560at 5395.703 kb on - strand, within AO353_24560at 5395.703 kb on - strand, within AO353_24560at 5395.780 kb on - strand, within AO353_24560at 5395.854 kb on + strand, within AO353_24560at 5395.854 kb on + strand, within AO353_24560at 5395.855 kb on - strand, within AO353_24560at 5395.855 kb on - strand, within AO353_24560at 5395.973 kb on + strandat 5395.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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5,393,819 + AO353_24540 0.19 -1.0
5,393,819 + AO353_24540 0.19 -0.2
5,393,819 + AO353_24540 0.19 +0.3
5,393,820 - AO353_24540 0.19 -0.3
5,393,879 + AO353_24540 0.38 +0.0
5,393,879 + AO353_24540 0.38 +0.1
5,393,880 - AO353_24540 0.38 +0.6
5,393,951 + AO353_24540 0.61 +0.5
5,394,001 + AO353_24540 0.76 +0.4
5,394,019 + AO353_24540 0.82 -0.5
5,394,019 + AO353_24540 0.82 -1.7
5,394,200 + -0.8
5,394,200 + +0.2
5,394,228 + AO353_24545 0.14 +0.0
5,394,228 + AO353_24545 0.14 -0.8
5,394,228 + AO353_24545 0.14 +1.5
5,394,228 + AO353_24545 0.14 -1.7
5,394,229 - AO353_24545 0.14 -0.4
5,394,299 + AO353_24545 0.34 +1.2
5,394,366 + AO353_24545 0.53 -0.6
5,394,366 + AO353_24545 0.53 +0.3
5,394,366 + AO353_24545 0.53 +1.1
5,394,366 + AO353_24545 0.53 -0.8
5,394,366 + AO353_24545 0.53 +0.2
5,394,367 - AO353_24545 0.53 +1.5
5,394,367 - AO353_24545 0.53 +0.8
5,394,367 - AO353_24545 0.53 -0.4
5,394,367 - AO353_24545 0.53 +0.4
5,394,367 - AO353_24545 0.53 -1.8
5,394,396 + AO353_24545 0.61 -0.5
5,394,406 + AO353_24545 0.64 +0.9
5,394,406 + AO353_24545 0.64 -0.5
5,394,407 - AO353_24545 0.64 -0.0
5,394,429 + AO353_24545 0.70 -0.4
5,394,429 + AO353_24545 0.70 -1.8
5,394,429 + -0.1
5,394,429 + AO353_24545 0.70 +0.3
5,394,429 + AO353_24545 0.70 +1.0
5,394,429 + AO353_24545 0.70 -0.6
5,394,430 - AO353_24545 0.70 +0.3
5,394,430 - AO353_24545 0.70 -0.1
5,394,430 - AO353_24545 0.70 -0.0
5,394,430 - AO353_24545 0.70 -1.1
5,394,430 - AO353_24545 0.70 +1.5
5,394,430 - AO353_24545 0.70 -0.3
5,394,430 - AO353_24545 0.70 +0.5
5,394,536 + -0.1
5,394,536 + +0.5
5,394,537 - -0.8
5,394,580 + +0.8
5,394,580 + +0.0
5,394,581 - +0.0
5,394,581 - -0.6
5,394,581 - -0.8
5,394,581 - -1.3
5,394,822 + AO353_24550 0.16 -0.8
5,394,823 - AO353_24550 0.16 -0.8
5,394,835 - AO353_24550 0.22 -3.4
5,394,844 + AO353_24550 0.27 -1.8
5,394,880 + AO353_24550 0.46 +0.6
5,394,881 - AO353_24550 0.46 +0.4
5,394,894 + AO353_24550 0.53 -1.5
5,394,976 + -1.6
5,394,976 + -0.1
5,394,976 + -0.5
5,394,977 - +0.5
5,394,977 - -1.7
5,394,977 - +1.5
5,395,024 + +0.4
5,395,024 + -1.5
5,395,025 - +0.2
5,395,064 - +0.3
5,395,109 + AO353_24555 0.17 -0.5
5,395,109 + AO353_24555 0.17 -1.5
5,395,110 - AO353_24555 0.17 -1.1
5,395,117 + AO353_24555 0.18 -0.4
5,395,117 + AO353_24555 0.18 -0.8
5,395,117 + AO353_24555 0.18 +0.9
5,395,118 - AO353_24555 0.18 +0.7
5,395,118 - AO353_24555 0.18 -0.1
5,395,118 - AO353_24555 0.18 +0.1
5,395,118 - AO353_24555 0.18 +0.1
5,395,162 + AO353_24555 0.27 -0.1
5,395,163 - AO353_24555 0.27 +0.2
5,395,213 + AO353_24555 0.37 -1.5
5,395,213 + AO353_24555 0.37 +0.3
5,395,213 + AO353_24555 0.37 -0.8
5,395,230 - AO353_24555 0.40 +0.0
5,395,230 - AO353_24555 0.40 +0.1
5,395,369 + AO353_24555 0.67 -0.6
5,395,369 + AO353_24555 0.67 +0.3
5,395,370 - AO353_24555 0.67 +1.5
5,395,370 - AO353_24555 0.67 -0.6
5,395,370 - AO353_24555 0.67 +0.0
5,395,370 - AO353_24555 0.67 +0.8
5,395,370 - AO353_24555 0.67 +0.6
5,395,468 + AO353_24555 0.86 +0.3
5,395,469 - AO353_24555 0.86 +1.0
5,395,469 - +1.2
5,395,469 - AO353_24555 0.86 +0.5
5,395,469 - AO353_24555 0.86 -0.2
5,395,522 - +1.3
5,395,581 + +1.4
5,395,597 + -0.3
5,395,604 + -2.4
5,395,667 + -0.7
5,395,667 + -0.1
5,395,702 + AO353_24560 0.13 -0.1
5,395,702 + AO353_24560 0.13 -0.6
5,395,702 + AO353_24560 0.13 +0.4
5,395,702 + AO353_24560 0.13 -0.9
5,395,703 - AO353_24560 0.13 +0.9
5,395,703 - AO353_24560 0.13 -1.8
5,395,780 - AO353_24560 0.38 +0.4
5,395,854 + AO353_24560 0.62 -0.3
5,395,854 + AO353_24560 0.62 -0.6
5,395,855 - AO353_24560 0.62 -1.2
5,395,855 - AO353_24560 0.62 +0.4
5,395,973 + +0.8
5,395,973 + -0.4

Or see this region's nucleotide sequence