Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08400

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,576,247	-				+0.7
1,576,247	-				+0.1
1,576,254	+				-0.0
1,576,414	+		MMP_RS08395	0.15	+0.1
1,576,635	+		MMP_RS08395	0.42	-0.0
1,576,638	-		MMP_RS08395	0.43	+0.3
1,576,639	+		MMP_RS08395	0.43	-0.1
1,576,738	+		MMP_RS08395	0.55	-0.1
1,576,899	+		MMP_RS08395	0.75	-0.2
1,577,091	-				+0.9
1,577,357	-		MMP_RS08400	0.57	+0.2
1,577,358	+		MMP_RS08400	0.57	+0.3
1,577,358	+		MMP_RS08400	0.57	+0.3
1,577,484	-				-0.1
1,577,485	+				+0.2
1,577,492	-				+1.0
1,577,503	-				-0.7
1,577,517	-				+0.2
1,577,517	-				+0.7
1,577,519	-				+0.6
1,577,520	+				+0.3
1,577,520	+				-0.0
1,577,843	-		MMP_RS08405	0.22	+0.0
1,577,883	-		MMP_RS08405	0.25	+0.0
1,577,957	+		MMP_RS08405	0.31	+0.3
1,577,957	+		MMP_RS08405	0.31	-0.0
1,577,968	+		MMP_RS08405	0.32	-0.4
1,577,973	+		MMP_RS08405	0.32	-0.1
1,578,021	-		MMP_RS08405	0.35	-0.1
1,578,022	+		MMP_RS08405	0.35	-0.1
1,578,042	-		MMP_RS08405	0.37	+0.6
1,578,058	-		MMP_RS08405	0.38	+0.6
1,578,059	+		MMP_RS08405	0.38	-0.0
1,578,177	-		MMP_RS08405	0.47	-0.1
1,578,300	+		MMP_RS08405	0.56	+0.0