Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04975 and MMP_RS04980 are separated by 340 nucleotides MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides
MMP_RS04975: MMP_RS04975 - hypothetical protein, at 948,263 to 949,270
_RS04975
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -1
0
1
2 at 948.752 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.792 kb on + strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.804 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.826 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.832 kb on + strand, within MMP_RS04975 at 948.840 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.928 kb on + strand, within MMP_RS04975 at 948.938 kb on - strand, within MMP_RS04975 at 948.939 kb on + strand, within MMP_RS04975 at 948.943 kb on - strand, within MMP_RS04975 at 948.987 kb on - strand, within MMP_RS04975 at 949.010 kb on - strand, within MMP_RS04975 at 949.022 kb on - strand, within MMP_RS04975 at 949.039 kb on - strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.093 kb on - strand, within MMP_RS04975 at 949.097 kb on + strand, within MMP_RS04975 at 949.188 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.226 kb on + strand at 949.231 kb on - strand at 949.232 kb on + strand at 949.239 kb on + strand at 949.313 kb on - strand at 949.313 kb on - strand at 949.314 kb on + strand at 949.335 kb on - strand at 949.336 kb on + strand at 949.382 kb on + strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.386 kb on - strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.390 kb on - strand at 949.420 kb on - strand at 949.431 kb on - strand at 949.445 kb on - strand at 949.460 kb on - strand at 949.491 kb on - strand at 949.491 kb on - strand at 949.493 kb on - strand at 949.493 kb on - strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.497 kb on + strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.518 kb on + strand at 949.526 kb on - strand at 949.526 kb on - strand at 949.527 kb on + strand at 949.545 kb on - strand at 949.546 kb on + strand at 949.622 kb on + strand at 949.679 kb on - strand at 949.718 kb on - strand at 949.729 kb on - strand at 949.843 kb on - strand, within MMP_RS04980 at 949.889 kb on - strand, within MMP_RS04980 at 949.890 kb on + strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.901 kb on + strand, within MMP_RS04980 at 950.060 kb on - strand, within MMP_RS04980 at 950.061 kb on + strand, within MMP_RS04980 at 950.092 kb on - strand, within MMP_RS04980 at 950.158 kb on + strand, within MMP_RS04980 at 950.239 kb on - strand, within MMP_RS04980 at 950.315 kb on - strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 948,752 - MMP_RS04975 0.49 -0.1 948,791 - MMP_RS04975 0.52 -0.2 948,791 - MMP_RS04975 0.52 +0.3 948,792 + MMP_RS04975 0.52 -0.1 948,798 - MMP_RS04975 0.53 -0.4 948,798 - MMP_RS04975 0.53 +0.2 948,798 - MMP_RS04975 0.53 -0.2 948,799 + MMP_RS04975 0.53 -0.3 948,799 + MMP_RS04975 0.53 +0.1 948,799 + MMP_RS04975 0.53 -0.6 948,803 - MMP_RS04975 0.54 -0.0 948,803 - MMP_RS04975 0.54 -0.1 948,803 - MMP_RS04975 0.54 -0.1 948,803 - MMP_RS04975 0.54 +0.4 948,804 + MMP_RS04975 0.54 -0.7 948,806 + MMP_RS04975 0.54 +0.1 948,806 + MMP_RS04975 0.54 -0.4 948,806 + MMP_RS04975 0.54 -0.1 948,826 - MMP_RS04975 0.56 -0.6 948,831 - MMP_RS04975 0.56 -0.1 948,831 - MMP_RS04975 0.56 -0.1 948,832 + MMP_RS04975 0.56 +0.8 948,840 + MMP_RS04975 0.57 -0.1 948,904 + MMP_RS04975 0.64 +0.2 948,904 + MMP_RS04975 0.64 -0.1 948,904 + MMP_RS04975 0.64 +0.9 948,928 + MMP_RS04975 0.66 +0.1 948,938 - MMP_RS04975 0.67 +0.1 948,939 + MMP_RS04975 0.67 +1.2 948,943 - MMP_RS04975 0.67 +0.9 948,987 - MMP_RS04975 0.72 -0.0 949,010 - MMP_RS04975 0.74 +0.2 949,022 - MMP_RS04975 0.75 -0.3 949,039 - MMP_RS04975 0.77 -0.6 949,040 + MMP_RS04975 0.77 +0.2 949,040 + MMP_RS04975 0.77 -0.4 949,048 + MMP_RS04975 0.78 +0.7 949,048 + MMP_RS04975 0.78 -0.0 949,048 + MMP_RS04975 0.78 +0.2 949,093 - MMP_RS04975 0.82 -0.2 949,097 + MMP_RS04975 0.83 -0.4 949,188 - -0.0 949,225 - -0.5 949,225 - +0.4 949,225 - -0.0 949,225 - -0.4 949,225 - +0.1 949,225 - +0.4 949,226 + -0.2 949,231 - +0.6 949,232 + -0.0 949,239 + +0.8 949,313 - -0.1 949,313 - -0.4 949,314 + +0.2 949,335 - +1.2 949,336 + +0.0 949,382 + +0.5 949,384 - +0.6 949,384 - -0.4 949,384 - -0.0 949,384 - -0.3 949,384 - +0.9 949,385 + +0.7 949,385 + -0.3 949,385 + +0.3 949,385 + -0.4 949,386 - -0.2 949,387 + +0.1 949,387 + -0.0 949,387 + -0.2 949,387 + -0.2 949,387 + +0.2 949,387 + +0.1 949,390 - -0.1 949,420 - +0.5 949,431 - +0.9 949,445 - -0.5 949,460 - +1.3 949,491 - +0.3 949,491 - +0.2 949,493 - -0.4 949,493 - +0.8 949,494 + +0.0 949,494 + -0.1 949,494 + -0.1 949,494 + -0.5 949,494 + +0.0 949,497 + +0.1 949,498 - +0.4 949,498 - -0.2 949,498 - -0.4 949,499 + +0.0 949,499 + -0.3 949,499 + +0.8 949,499 + +0.2 949,501 - +0.5 949,501 - -0.0 949,501 - -0.1 949,501 - -0.2 949,501 - -0.1 949,501 - -0.2 949,501 - +0.5 949,501 - +0.0 949,501 - +0.3 949,502 + -0.2 949,502 + -0.1 949,502 + +0.1 949,502 + +0.8 949,502 + +0.2 949,502 + -0.0 949,502 + +0.0 949,518 + +0.6 949,526 - -0.0 949,526 - +0.1 949,527 + +0.3 949,545 - +0.2 949,546 + +0.2 949,622 + +0.1 949,679 - -0.2 949,718 - +0.2 949,729 - -0.3 949,843 - MMP_RS04980 0.15 +0.1 949,889 - MMP_RS04980 0.19 +0.1 949,890 + MMP_RS04980 0.19 +0.0 949,891 - MMP_RS04980 0.19 +0.0 949,891 - MMP_RS04980 0.19 -0.0 949,901 + MMP_RS04980 0.19 -0.0 950,060 - MMP_RS04980 0.30 +0.1 950,061 + MMP_RS04980 0.30 +0.1 950,092 - MMP_RS04980 0.32 +0.1 950,158 + MMP_RS04980 0.36 +0.0 950,239 - MMP_RS04980 0.42 -0.2 950,315 - MMP_RS04980 0.47 -0.5 950,323 + MMP_RS04980 0.47 +0.4 950,323 + MMP_RS04980 0.47 -0.1 950,359 - MMP_RS04980 0.50 +0.4 950,360 + MMP_RS04980 0.50 -0.2 950,401 - MMP_RS04980 0.53 +0.7 950,406 + MMP_RS04980 0.53 -0.3 950,416 + MMP_RS04980 0.54 +0.2 950,416 + MMP_RS04980 0.54 +0.5 950,416 + MMP_RS04980 0.54 +0.8 950,416 + MMP_RS04980 0.54 +0.5 950,522 - MMP_RS04980 0.61 -0.3 950,523 + MMP_RS04980 0.61 +0.1 950,566 - MMP_RS04980 0.64 +0.1 950,567 + MMP_RS04980 0.64 +1.3 950,567 + MMP_RS04980 0.64 +0.1 950,609 - MMP_RS04980 0.67 +0.6 950,609 - MMP_RS04980 0.67 +0.1 950,648 + MMP_RS04980 0.69 +0.8 950,677 + MMP_RS04980 0.71 -0.3 950,681 + MMP_RS04980 0.71 +1.1 950,746 + MMP_RS04980 0.76 -0.2 950,746 + MMP_RS04980 0.76 +0.1 950,747 - MMP_RS04980 0.76 +0.5 950,761 - MMP_RS04980 0.77 -0.3 950,865 + MMP_RS04980 0.84 +0.2 950,884 + MMP_RS04980 0.85 +0.2 951,085 + +0.4 951,107 + -0.2 951,108 - -0.5 951,113 - +0.2 951,114 + +0.5 951,120 + -0.1 951,156 + -0.4 951,238 + MMP_RS04985 0.43 -0.2 951,238 + MMP_RS04985 0.43 +0.2 951,240 - MMP_RS04985 0.44 +0.0 951,241 + MMP_RS04985 0.44 +2.2 951,241 + MMP_RS04985 0.44 +0.3 951,335 + MMP_RS04985 0.88 +0.1 951,565 + MMP_RS04990 0.29 +0.3 951,565 + MMP_RS04990 0.29 -0.3 951,636 - MMP_RS04990 0.39 -0.2 951,644 - MMP_RS04990 0.40 -0.2 951,647 + MMP_RS04990 0.40 -0.5 951,648 - MMP_RS04990 0.40 -0.2 951,649 + MMP_RS04990 0.40 -0.1 951,649 + MMP_RS04990 0.40 +1.0 951,762 + MMP_RS04990 0.56 +0.2 951,973 + MMP_RS04990 0.85 +0.1 951,995 + MMP_RS04990 0.88 +0.2 951,998 + MMP_RS04990 0.89 +0.0 952,007 - -0.1 952,009 - -0.0 952,009 - -0.4 952,009 - +0.1 952,009 - +0.2 952,010 + +0.1 952,010 + -0.0 952,010 + +0.1 952,011 - +0.1 952,011 - -0.0 952,012 + +0.1 952,012 + +0.4 952,012 + -0.0 952,012 + +0.4 952,037 - +0.1 952,037 - +0.8 952,037 - -0.6 952,037 - +0.2 952,038 + +0.0 952,038 + -0.5 952,054 - +0.4 952,054 - -0.2 952,054 - +0.2 952,075 - -0.6 952,075 - -0.5
Or see this region's nucleotide sequence