Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04185 and MMP_RS04190 are separated by 87 nucleotides MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides MMP_RS04195 and MMP_RS04200 are separated by 30 nucleotides
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
MMP_RS04200: MMP_RS04200 - DUF111 family protein, at 798,627 to 799,346
_RS04200
Position (kb) 797
798 Strain fitness (log2 ratio) -1
0
1 at 796.333 kb on - strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.445 kb on + strand, within MMP_RS04185 at 796.448 kb on + strand, within MMP_RS04185 at 796.600 kb on - strand, within MMP_RS04185 at 796.635 kb on - strand, within MMP_RS04185 at 796.861 kb on + strand, within MMP_RS04185 at 796.881 kb on - strand, within MMP_RS04185 at 796.916 kb on - strand, within MMP_RS04185 at 796.919 kb on - strand, within MMP_RS04185 at 797.002 kb on - strand, within MMP_RS04185 at 797.047 kb on + strand, within MMP_RS04185 at 797.055 kb on + strand, within MMP_RS04185 at 797.099 kb on - strand, within MMP_RS04185 at 797.100 kb on + strand, within MMP_RS04185 at 797.172 kb on - strand at 797.273 kb on - strand at 797.305 kb on + strand at 797.361 kb on - strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.365 kb on + strand at 797.403 kb on + strand, within MMP_RS04190 at 797.536 kb on + strand, within MMP_RS04190 at 797.597 kb on + strand, within MMP_RS04190 at 797.709 kb on + strand, within MMP_RS04190 at 797.723 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.810 kb on + strand at 797.810 kb on + strand at 797.818 kb on - strand at 797.821 kb on + strand at 797.821 kb on + strand at 797.859 kb on - strand at 797.959 kb on + strand at 797.959 kb on + strand at 798.002 kb on + strand at 798.090 kb on + strand at 798.090 kb on + strand at 798.179 kb on + strand, within MMP_RS04195 at 798.301 kb on - strand, within MMP_RS04195 at 798.508 kb on - strand, within MMP_RS04195 at 798.511 kb on - strand, within MMP_RS04195 at 798.574 kb on - strand at 798.578 kb on - strand at 798.579 kb on + strand at 798.608 kb on + strand at 798.612 kb on + strand at 798.622 kb on - strand at 798.623 kb on + strand at 798.639 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.743 kb on + strand, within MMP_RS04200 at 798.759 kb on + strand, within MMP_RS04200 at 798.782 kb on - strand, within MMP_RS04200 at 798.806 kb on - strand, within MMP_RS04200 at 798.807 kb on + strand, within MMP_RS04200 at 798.837 kb on - strand, within MMP_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 796,333 - MMP_RS04185 0.19 +0.2 796,333 - MMP_RS04185 0.19 -0.1 796,347 - MMP_RS04185 0.20 -0.3 796,347 - MMP_RS04185 0.20 +0.1 796,445 + MMP_RS04185 0.29 -0.2 796,448 + MMP_RS04185 0.29 +0.2 796,600 - MMP_RS04185 0.42 -0.4 796,635 - MMP_RS04185 0.46 -0.2 796,861 + MMP_RS04185 0.66 +0.1 796,881 - MMP_RS04185 0.68 +0.1 796,916 - MMP_RS04185 0.71 -0.1 796,919 - MMP_RS04185 0.71 +0.5 797,002 - MMP_RS04185 0.79 +0.0 797,047 + MMP_RS04185 0.83 -0.2 797,055 + MMP_RS04185 0.83 -0.1 797,099 - MMP_RS04185 0.87 -0.4 797,100 + MMP_RS04185 0.87 -0.2 797,172 - -0.7 797,273 - -0.1 797,305 + +0.0 797,361 - +0.5 797,362 + -0.6 797,362 + -0.4 797,362 + -0.2 797,365 + -0.0 797,403 + MMP_RS04190 0.15 -0.2 797,536 + MMP_RS04190 0.41 -0.1 797,597 + MMP_RS04190 0.52 -0.2 797,709 + MMP_RS04190 0.74 -0.1 797,723 - MMP_RS04190 0.77 -0.2 797,728 - MMP_RS04190 0.78 +0.0 797,728 - MMP_RS04190 0.78 +0.1 797,810 + +0.5 797,810 + +0.1 797,818 - +0.8 797,821 + +0.4 797,821 + -0.5 797,859 - +0.3 797,959 + +0.1 797,959 + +0.5 798,002 + -0.8 798,090 + +0.0 798,090 + +0.7 798,179 + MMP_RS04195 0.22 +0.2 798,301 - MMP_RS04195 0.45 -0.2 798,508 - MMP_RS04195 0.83 +0.5 798,511 - MMP_RS04195 0.84 +0.2 798,574 - +0.2 798,578 - +0.0 798,579 + +0.4 798,608 + -0.2 798,612 + +0.2 798,622 - +0.1 798,623 + +0.3 798,639 + +0.2 798,687 + +0.2 798,687 + +0.1 798,743 + MMP_RS04200 0.16 -0.1 798,759 + MMP_RS04200 0.18 -0.4 798,782 - MMP_RS04200 0.22 +0.3 798,806 - MMP_RS04200 0.25 -0.4 798,807 + MMP_RS04200 0.25 +0.5 798,837 - MMP_RS04200 0.29 -0.9
Or see this region's nucleotide sequence