Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03800

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03790 and MMP_RS03795 are separated by 7 nucleotidesMMP_RS03795 and MMP_RS03800 are separated by 352 nucleotidesMMP_RS03800 and MMP_RS03805 are separated by 35 nucleotides MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317 _RS03790 MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882 _RS03795 MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468 _RS03800 MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444 _RS03805 Position (kb) 717 718Strain fitness (log2 ratio) -1 0 1at 716.252 kb on - strand, within MMP_RS03790at 716.252 kb on - strand, within MMP_RS03790at 716.258 kb on - strand, within MMP_RS03790at 716.259 kb on + strand, within MMP_RS03790at 716.326 kb on - strandat 716.350 kb on - strandat 716.388 kb on + strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.391 kb on - strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.425 kb on + strand, within MMP_RS03795at 716.615 kb on + strand, within MMP_RS03795at 716.686 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.694 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.706 kb on - strand, within MMP_RS03795at 716.707 kb on + strand, within MMP_RS03795at 716.773 kb on + strand, within MMP_RS03795at 716.886 kb on - strandat 716.894 kb on - strandat 716.906 kb on - strandat 716.906 kb on - strandat 716.927 kb on - strandat 716.964 kb on - strandat 716.965 kb on + strandat 717.017 kb on + strandat 717.040 kb on - strandat 717.041 kb on + strandat 717.042 kb on - strandat 717.043 kb on + strandat 717.045 kb on + strandat 717.045 kb on + strandat 717.163 kb on - strandat 717.163 kb on - strandat 717.164 kb on + strandat 717.164 kb on + strandat 717.166 kb on - strandat 717.191 kb on + strandat 717.195 kb on - strandat 717.196 kb on + strandat 717.199 kb on - strandat 717.215 kb on - strandat 717.215 kb on - strandat 717.277 kb on + strand, within MMP_RS03800at 717.277 kb on + strand, within MMP_RS03800at 717.283 kb on - strand, within MMP_RS03800at 717.435 kb on + strand, within MMP_RS03800at 717.456 kb on - strandat 717.484 kb on + strandat 717.586 kb on - strandat 717.587 kb on + strandat 717.637 kb on + strandat 717.637 kb on + strandat 717.638 kb on - strandat 717.639 kb on + strandat 717.894 kb on - strand, within MMP_RS03805at 718.014 kb on - strand, within MMP_RS03805at 718.026 kb on - strand, within MMP_RS03805at 718.061 kb on + strand, within MMP_RS03805at 718.228 kb on + strand, within MMP_RS03805at 718.297 kb on - strand, within MMP_RS03805at 718.319 kb on - strand, within MMP_RS03805at 718.388 kb on - strand, within MMP_RS03805at 718.388 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.400 kb on + strand, within MMP_RS03805

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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716,252 - MMP_RS03790 0.85 +0.8
716,252 - MMP_RS03790 0.85 +0.4
716,258 - MMP_RS03790 0.86 +0.1
716,259 + MMP_RS03790 0.86 +0.1
716,326 - -0.1
716,350 - -0.1
716,388 + MMP_RS03795 0.11 +0.1
716,389 - MMP_RS03795 0.11 -0.2
716,389 - MMP_RS03795 0.11 +0.4
716,389 - MMP_RS03795 0.11 +0.5
716,389 - MMP_RS03795 0.11 -0.3
716,389 - MMP_RS03795 0.11 -0.3
716,389 - MMP_RS03795 0.11 +0.3
716,390 + MMP_RS03795 0.12 -0.0
716,390 + MMP_RS03795 0.12 +0.0
716,390 + MMP_RS03795 0.12 +0.9
716,391 - MMP_RS03795 0.12 -0.6
716,392 + MMP_RS03795 0.12 +0.1
716,392 + MMP_RS03795 0.12 +0.1
716,392 + MMP_RS03795 0.12 -0.1
716,425 + MMP_RS03795 0.18 -0.8
716,615 + MMP_RS03795 0.52 -0.3
716,686 - MMP_RS03795 0.65 -0.2
716,693 - MMP_RS03795 0.66 -0.2
716,693 - MMP_RS03795 0.66 +0.3
716,694 + MMP_RS03795 0.66 +0.2
716,700 + MMP_RS03795 0.67 +0.3
716,700 + MMP_RS03795 0.67 -0.1
716,706 - MMP_RS03795 0.68 +0.6
716,707 + MMP_RS03795 0.68 -0.0
716,773 + MMP_RS03795 0.80 -0.6
716,886 - -0.2
716,894 - +0.4
716,906 - +0.1
716,906 - +0.1
716,927 - -0.2
716,964 - +0.2
716,965 + -0.1
717,017 + -0.6
717,040 - -0.0
717,041 + -0.1
717,042 - -0.3
717,043 + +0.1
717,045 + +0.2
717,045 + +0.1
717,163 - -0.4
717,163 - +0.4
717,164 + -0.2
717,164 + +0.4
717,166 - -0.5
717,191 + -0.1
717,195 - -0.1
717,196 + -0.3
717,199 - -0.4
717,215 - +0.1
717,215 - +0.1
717,277 + MMP_RS03800 0.18 +0.0
717,277 + MMP_RS03800 0.18 +0.9
717,283 - MMP_RS03800 0.21 +0.9
717,435 + MMP_RS03800 0.85 +0.5
717,456 - -0.1
717,484 + -0.4
717,586 - -0.3
717,587 + -0.1
717,637 + +1.3
717,637 + -0.1
717,638 - -0.1
717,639 + -0.2
717,894 - MMP_RS03805 0.20 -0.8
718,014 - MMP_RS03805 0.26 +0.3
718,026 - MMP_RS03805 0.27 +0.7
718,061 + MMP_RS03805 0.29 -0.4
718,228 + MMP_RS03805 0.37 -0.1
718,297 - MMP_RS03805 0.41 +0.1
718,319 - MMP_RS03805 0.42 -0.1
718,388 - MMP_RS03805 0.46 -0.2
718,388 - MMP_RS03805 0.46 +0.1
718,399 - MMP_RS03805 0.46 +0.4
718,399 - MMP_RS03805 0.46 -0.1
718,399 - MMP_RS03805 0.46 +0.2
718,400 + MMP_RS03805 0.46 +0.2

Or see this region's nucleotide sequence