Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03745

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03735 and MMP_RS03740 overlap by 1 nucleotidesMMP_RS03740 and MMP_RS03745 are separated by 10 nucleotidesMMP_RS03745 and MMP_RS03750 are separated by 13 nucleotidesMMP_RS03750 and MMP_RS03755 are separated by 12 nucleotides MMP_RS03735: MMP_RS03735 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 706,252 to 707,988 _RS03735 MMP_RS03740: MMP_RS03740 - indolepyruvate oxidoreductase subunit beta, at 707,988 to 708,554 _RS03740 MMP_RS03745: MMP_RS03745 - phenylacetate--CoA ligase, at 708,565 to 709,863 _RS03745 MMP_RS03750: MMP_RS03750 - ACT domain-containing protein, at 709,877 to 710,302 _RS03750 MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851 _RS03755 Position (kb) 708 709 710Strain fitness (log2 ratio) -1 0 1at 707.969 kb on - strandat 707.969 kb on - strandat 707.970 kb on + strandat 707.970 kb on + strandat 707.981 kb on - strandat 708.133 kb on + strand, within MMP_RS03740at 708.226 kb on + strand, within MMP_RS03740at 708.263 kb on + strand, within MMP_RS03740at 708.292 kb on - strand, within MMP_RS03740at 708.413 kb on + strand, within MMP_RS03740at 708.553 kb on + strandat 708.582 kb on - strandat 708.624 kb on - strandat 708.646 kb on + strandat 708.656 kb on + strandat 708.750 kb on - strand, within MMP_RS03745at 708.792 kb on + strand, within MMP_RS03745at 708.864 kb on + strand, within MMP_RS03745at 709.115 kb on + strand, within MMP_RS03745at 709.123 kb on - strand, within MMP_RS03745at 709.262 kb on - strand, within MMP_RS03745at 709.262 kb on - strand, within MMP_RS03745at 709.265 kb on + strand, within MMP_RS03745at 709.413 kb on + strand, within MMP_RS03745at 709.416 kb on - strand, within MMP_RS03745at 709.417 kb on + strand, within MMP_RS03745at 709.417 kb on + strand, within MMP_RS03745at 709.640 kb on - strand, within MMP_RS03745at 709.657 kb on + strand, within MMP_RS03745at 709.796 kb on - strandat 709.797 kb on + strandat 709.927 kb on + strand, within MMP_RS03750at 710.010 kb on - strand, within MMP_RS03750at 710.091 kb on - strand, within MMP_RS03750at 710.159 kb on + strand, within MMP_RS03750at 710.172 kb on + strand, within MMP_RS03750at 710.175 kb on - strand, within MMP_RS03750at 710.175 kb on - strand, within MMP_RS03750at 710.176 kb on + strand, within MMP_RS03750at 710.248 kb on + strand, within MMP_RS03750at 710.301 kb on + strandat 710.326 kb on - strandat 710.375 kb on + strand, within MMP_RS03755at 710.415 kb on + strand, within MMP_RS03755at 710.478 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.483 kb on + strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.502 kb on - strand, within MMP_RS03755at 710.503 kb on + strand, within MMP_RS03755at 710.524 kb on - strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.525 kb on + strand, within MMP_RS03755at 710.616 kb on + strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.636 kb on - strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.637 kb on + strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.643 kb on - strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.644 kb on + strand, within MMP_RS03755at 710.653 kb on - strand, within MMP_RS03755at 710.750 kb on + strand, within MMP_RS03755at 710.767 kb on - strand, within MMP_RS03755at 710.783 kb on - strand, within MMP_RS03755at 710.784 kb on + strand, within MMP_RS03755at 710.818 kb on + strandat 710.831 kb on - strandat 710.832 kb on + strandat 710.832 kb on + strandat 710.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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707,969 - +0.3
707,969 - +0.4
707,970 + -0.4
707,970 + -0.2
707,981 - -0.7
708,133 + MMP_RS03740 0.26 -0.2
708,226 + MMP_RS03740 0.42 +0.2
708,263 + MMP_RS03740 0.49 +0.1
708,292 - MMP_RS03740 0.54 -0.1
708,413 + MMP_RS03740 0.75 -0.2
708,553 + +0.2
708,582 - -0.0
708,624 - -0.2
708,646 + -0.6
708,656 + +0.0
708,750 - MMP_RS03745 0.14 +0.1
708,792 + MMP_RS03745 0.17 +1.4
708,864 + MMP_RS03745 0.23 +0.5
709,115 + MMP_RS03745 0.42 +0.0
709,123 - MMP_RS03745 0.43 -0.2
709,262 - MMP_RS03745 0.54 -0.0
709,262 - MMP_RS03745 0.54 -0.3
709,265 + MMP_RS03745 0.54 +0.3
709,413 + MMP_RS03745 0.65 -0.0
709,416 - MMP_RS03745 0.66 -0.0
709,417 + MMP_RS03745 0.66 +0.1
709,417 + MMP_RS03745 0.66 -0.3
709,640 - MMP_RS03745 0.83 +0.6
709,657 + MMP_RS03745 0.84 +0.4
709,796 - -0.0
709,797 + -0.3
709,927 + MMP_RS03750 0.12 +0.1
710,010 - MMP_RS03750 0.31 +0.0
710,091 - MMP_RS03750 0.50 -0.3
710,159 + MMP_RS03750 0.66 -0.3
710,172 + MMP_RS03750 0.69 +0.1
710,175 - MMP_RS03750 0.70 -0.1
710,175 - MMP_RS03750 0.70 +0.1
710,176 + MMP_RS03750 0.70 -0.0
710,248 + MMP_RS03750 0.87 -0.0
710,301 + +0.3
710,326 - +0.1
710,375 + MMP_RS03755 0.11 -0.2
710,415 + MMP_RS03755 0.19 +0.9
710,478 + MMP_RS03755 0.30 -0.3
710,483 + MMP_RS03755 0.31 -0.2
710,483 + MMP_RS03755 0.31 +1.3
710,502 - MMP_RS03755 0.35 -0.4
710,502 - MMP_RS03755 0.35 -0.2
710,503 + MMP_RS03755 0.35 +0.2
710,524 - MMP_RS03755 0.39 -0.1
710,525 + MMP_RS03755 0.39 -0.0
710,525 + MMP_RS03755 0.39 +0.3
710,525 + MMP_RS03755 0.39 +0.3
710,616 + MMP_RS03755 0.56 +0.1
710,636 - MMP_RS03755 0.60 +0.6
710,636 - MMP_RS03755 0.60 +0.4
710,637 + MMP_RS03755 0.60 -0.2
710,637 + MMP_RS03755 0.60 -0.2
710,643 - MMP_RS03755 0.61 +0.2
710,643 - MMP_RS03755 0.61 -0.6
710,643 - MMP_RS03755 0.61 -0.1
710,643 - MMP_RS03755 0.61 +0.0
710,644 + MMP_RS03755 0.61 +0.4
710,644 + MMP_RS03755 0.61 -0.1
710,653 - MMP_RS03755 0.63 +0.1
710,750 + MMP_RS03755 0.81 +0.1
710,767 - MMP_RS03755 0.84 -0.3
710,783 - MMP_RS03755 0.87 -0.1
710,784 + MMP_RS03755 0.87 -0.0
710,818 + +0.4
710,831 - -0.0
710,832 + +0.7
710,832 + -0.2
710,832 + +0.6

Or see this region's nucleotide sequence