Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03615

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03610 and MMP_RS03615 are separated by 66 nucleotidesMMP_RS03615 and MMP_RS03620 are separated by 5 nucleotidesMMP_RS03620 and MMP_RS03625 are separated by 85 nucleotides MMP_RS03610: MMP_RS03610 - NCS2 family permease, at 677,464 to 678,765 _RS03610 MMP_RS03615: MMP_RS03615 - 4Fe-4S binding protein, at 678,832 to 679,533 _RS03615 MMP_RS03620: MMP_RS03620 - hypothetical protein, at 679,539 to 680,084 _RS03620 MMP_RS03625: MMP_RS03625 - cell wall-binding protein, at 680,170 to 681,129 _RS03625 Position (kb) 678 679 680Strain fitness (log2 ratio) -1 0 1at 677.840 kb on - strand, within MMP_RS03610at 677.874 kb on - strand, within MMP_RS03610at 677.883 kb on + strand, within MMP_RS03610at 677.883 kb on + strand, within MMP_RS03610at 677.949 kb on - strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.958 kb on + strand, within MMP_RS03610at 678.183 kb on - strand, within MMP_RS03610at 678.198 kb on + strand, within MMP_RS03610at 678.231 kb on + strand, within MMP_RS03610at 678.237 kb on - strand, within MMP_RS03610at 678.317 kb on - strand, within MMP_RS03610at 678.318 kb on + strand, within MMP_RS03610at 678.361 kb on + strand, within MMP_RS03610at 678.361 kb on + strand, within MMP_RS03610at 678.373 kb on + strand, within MMP_RS03610at 678.379 kb on - strand, within MMP_RS03610at 678.379 kb on - strand, within MMP_RS03610at 678.437 kb on - strand, within MMP_RS03610at 678.437 kb on - strand, within MMP_RS03610at 678.456 kb on + strand, within MMP_RS03610at 678.499 kb on - strand, within MMP_RS03610at 678.500 kb on + strand, within MMP_RS03610at 678.723 kb on + strandat 678.801 kb on - strandat 678.892 kb on + strandat 678.892 kb on + strandat 678.972 kb on - strand, within MMP_RS03615at 679.044 kb on + strand, within MMP_RS03615at 679.099 kb on - strand, within MMP_RS03615at 679.101 kb on - strand, within MMP_RS03615at 679.102 kb on + strand, within MMP_RS03615at 679.166 kb on - strand, within MMP_RS03615at 679.167 kb on + strand, within MMP_RS03615at 679.174 kb on + strand, within MMP_RS03615at 679.179 kb on - strand, within MMP_RS03615at 679.215 kb on + strand, within MMP_RS03615at 679.252 kb on - strand, within MMP_RS03615at 679.330 kb on - strand, within MMP_RS03615at 679.332 kb on - strand, within MMP_RS03615at 679.384 kb on - strand, within MMP_RS03615at 679.385 kb on + strand, within MMP_RS03615at 679.461 kb on - strand, within MMP_RS03615at 679.484 kb on + strandat 679.668 kb on - strand, within MMP_RS03620at 679.669 kb on + strand, within MMP_RS03620at 679.680 kb on - strand, within MMP_RS03620at 679.702 kb on - strand, within MMP_RS03620at 679.704 kb on - strand, within MMP_RS03620at 679.705 kb on + strand, within MMP_RS03620at 679.748 kb on - strand, within MMP_RS03620at 679.749 kb on + strand, within MMP_RS03620at 679.753 kb on + strand, within MMP_RS03620at 679.811 kb on - strand, within MMP_RS03620at 679.814 kb on + strand, within MMP_RS03620at 679.847 kb on + strand, within MMP_RS03620at 679.902 kb on - strand, within MMP_RS03620at 679.960 kb on - strand, within MMP_RS03620at 680.096 kb on - strandat 680.097 kb on + strandat 680.099 kb on + strandat 680.099 kb on + strandat 680.156 kb on + strandat 680.158 kb on + strandat 680.158 kb on + strandat 680.242 kb on - strandat 680.388 kb on + strand, within MMP_RS03625at 680.393 kb on - strand, within MMP_RS03625at 680.393 kb on - strand, within MMP_RS03625at 680.394 kb on + strand, within MMP_RS03625at 680.414 kb on - strand, within MMP_RS03625

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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677,840 - MMP_RS03610 0.29 +0.3
677,874 - MMP_RS03610 0.31 +0.6
677,883 + MMP_RS03610 0.32 +1.5
677,883 + MMP_RS03610 0.32 +0.3
677,949 - MMP_RS03610 0.37 -0.3
677,950 + MMP_RS03610 0.37 +0.3
677,950 + MMP_RS03610 0.37 -0.0
677,950 + MMP_RS03610 0.37 -0.4
677,958 + MMP_RS03610 0.38 -0.4
678,183 - MMP_RS03610 0.55 +0.7
678,198 + MMP_RS03610 0.56 -0.8
678,231 + MMP_RS03610 0.59 -0.4
678,237 - MMP_RS03610 0.59 +0.1
678,317 - MMP_RS03610 0.66 -0.4
678,318 + MMP_RS03610 0.66 -0.8
678,361 + MMP_RS03610 0.69 +0.5
678,361 + MMP_RS03610 0.69 -0.4
678,373 + MMP_RS03610 0.70 -0.2
678,379 - MMP_RS03610 0.70 +0.2
678,379 - MMP_RS03610 0.70 -0.4
678,437 - MMP_RS03610 0.75 -0.1
678,437 - MMP_RS03610 0.75 +0.2
678,456 + MMP_RS03610 0.76 -0.0
678,499 - MMP_RS03610 0.79 +0.9
678,500 + MMP_RS03610 0.80 +0.2
678,723 + -0.2
678,801 - -0.0
678,892 + +0.2
678,892 + -0.5
678,972 - MMP_RS03615 0.20 +0.0
679,044 + MMP_RS03615 0.30 +0.5
679,099 - MMP_RS03615 0.38 +0.1
679,101 - MMP_RS03615 0.38 -0.1
679,102 + MMP_RS03615 0.38 -0.2
679,166 - MMP_RS03615 0.48 +0.2
679,167 + MMP_RS03615 0.48 +0.2
679,174 + MMP_RS03615 0.49 -0.0
679,179 - MMP_RS03615 0.49 +0.2
679,215 + MMP_RS03615 0.55 +1.1
679,252 - MMP_RS03615 0.60 +0.2
679,330 - MMP_RS03615 0.71 +0.1
679,332 - MMP_RS03615 0.71 -0.0
679,384 - MMP_RS03615 0.79 +0.5
679,385 + MMP_RS03615 0.79 +0.1
679,461 - MMP_RS03615 0.90 +0.1
679,484 + -0.2
679,668 - MMP_RS03620 0.24 +0.4
679,669 + MMP_RS03620 0.24 -0.4
679,680 - MMP_RS03620 0.26 -0.5
679,702 - MMP_RS03620 0.30 -0.1
679,704 - MMP_RS03620 0.30 +0.0
679,705 + MMP_RS03620 0.30 -0.3
679,748 - MMP_RS03620 0.38 -0.4
679,749 + MMP_RS03620 0.38 -0.1
679,753 + MMP_RS03620 0.39 +0.1
679,811 - MMP_RS03620 0.50 -0.0
679,814 + MMP_RS03620 0.50 -0.4
679,847 + MMP_RS03620 0.56 -0.3
679,902 - MMP_RS03620 0.66 -0.7
679,960 - MMP_RS03620 0.77 -0.0
680,096 - +0.1
680,097 + +0.4
680,099 + -0.1
680,099 + -0.2
680,156 + -0.1
680,158 + -0.2
680,158 + +0.4
680,242 - -0.0
680,388 + MMP_RS03625 0.23 +0.6
680,393 - MMP_RS03625 0.23 +0.5
680,393 - MMP_RS03625 0.23 -0.3
680,394 + MMP_RS03625 0.23 +0.4
680,414 - MMP_RS03625 0.25 -0.0

Or see this region's nucleotide sequence