Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02950 and MMP_RS02955 are separated by 118 nucleotides MMP_RS02955 and MMP_RS02960 are separated by 61 nucleotides MMP_RS02960 and MMP_RS02965 are separated by 13 nucleotides MMP_RS02965 and MMP_RS02970 are separated by 334 nucleotides
MMP_RS02950: MMP_RS02950 - hypothetical protein, at 560,281 to 560,577
_RS02950
MMP_RS02955: MMP_RS02955 - DJ-1/PfpI family protein, at 560,696 to 561,211
_RS02955
MMP_RS02960: MMP_RS02960 - class I SAM-dependent methyltransferase family protein, at 561,273 to 562,034
_RS02960
MMP_RS02965: MMP_RS02965 - carboxymuconolactone decarboxylase family protein, at 562,048 to 562,482
_RS02965
MMP_RS02970: MMP_RS02970 - hypothetical protein, at 562,817 to 563,107
_RS02970
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1 at 560.282 kb on - strand at 560.604 kb on - strand at 560.616 kb on - strand at 560.627 kb on - strand at 560.636 kb on - strand at 560.647 kb on + strand at 560.651 kb on - strand at 560.659 kb on + strand at 560.659 kb on + strand at 560.659 kb on + strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.660 kb on - strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.661 kb on + strand at 560.707 kb on + strand at 560.757 kb on - strand, within MMP_RS02955 at 560.764 kb on + strand, within MMP_RS02955 at 560.896 kb on - strand, within MMP_RS02955 at 560.897 kb on + strand, within MMP_RS02955 at 561.250 kb on - strand at 561.251 kb on + strand at 561.251 kb on + strand at 561.323 kb on - strand at 561.334 kb on - strand at 561.355 kb on + strand, within MMP_RS02960 at 561.366 kb on + strand, within MMP_RS02960 at 561.398 kb on - strand, within MMP_RS02960 at 561.398 kb on - strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.399 kb on + strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.402 kb on - strand, within MMP_RS02960 at 561.651 kb on - strand, within MMP_RS02960 at 561.835 kb on - strand, within MMP_RS02960 at 561.888 kb on + strand, within MMP_RS02960 at 561.968 kb on - strand at 561.982 kb on + strand at 562.111 kb on + strand, within MMP_RS02965 at 562.111 kb on + strand, within MMP_RS02965 at 562.114 kb on + strand, within MMP_RS02965 at 562.210 kb on - strand, within MMP_RS02965 at 562.483 kb on + strand at 562.509 kb on - strand at 562.515 kb on + strand at 562.559 kb on - strand at 562.567 kb on + strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.576 kb on - strand at 562.577 kb on + strand at 562.584 kb on + strand at 562.622 kb on + strand at 562.634 kb on + strand at 562.683 kb on - strand at 562.860 kb on - strand, within MMP_RS02970 at 562.860 kb on - strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.921 kb on + strand, within MMP_RS02970
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 560,282 - +0.4 560,604 - -0.2 560,616 - +0.2 560,627 - +0.0 560,636 - +0.1 560,647 + -0.3 560,651 - -0.2 560,659 + -0.1 560,659 + +0.3 560,659 + -0.4 560,660 - +0.2 560,660 - +0.3 560,660 - +0.5 560,660 - +1.2 560,661 + +0.1 560,661 + +0.4 560,661 + +0.5 560,661 + +1.1 560,661 + +0.1 560,661 + +0.5 560,707 + +0.4 560,757 - MMP_RS02955 0.12 +0.3 560,764 + MMP_RS02955 0.13 -0.0 560,896 - MMP_RS02955 0.39 +0.1 560,897 + MMP_RS02955 0.39 +0.1 561,250 - +0.0 561,251 + -0.6 561,251 + -0.6 561,323 - +0.3 561,334 - +1.2 561,355 + MMP_RS02960 0.11 +0.4 561,366 + MMP_RS02960 0.12 +0.4 561,398 - MMP_RS02960 0.16 +0.1 561,398 - MMP_RS02960 0.16 +0.2 561,399 + MMP_RS02960 0.17 +0.1 561,399 + MMP_RS02960 0.17 +0.3 561,399 + MMP_RS02960 0.17 -0.4 561,402 - MMP_RS02960 0.17 +0.3 561,402 - MMP_RS02960 0.17 +0.4 561,402 - MMP_RS02960 0.17 +1.0 561,651 - MMP_RS02960 0.50 -0.0 561,835 - MMP_RS02960 0.74 +0.3 561,888 + MMP_RS02960 0.81 +0.2 561,968 - -0.1 561,982 + +0.4 562,111 + MMP_RS02965 0.14 -0.4 562,111 + MMP_RS02965 0.14 -0.2 562,114 + MMP_RS02965 0.15 -0.1 562,210 - MMP_RS02965 0.37 +0.1 562,483 + -0.4 562,509 - -0.2 562,515 + -0.0 562,559 - +0.3 562,567 + -0.1 562,568 - -0.1 562,568 - -0.1 562,568 - -0.3 562,576 - -0.3 562,577 + +0.2 562,584 + -0.2 562,622 + -0.1 562,634 + -0.1 562,683 - +0.1 562,860 - MMP_RS02970 0.15 +0.1 562,860 - MMP_RS02970 0.15 -0.3 562,918 + MMP_RS02970 0.35 +0.3 562,918 + MMP_RS02970 0.35 +0.5 562,921 + MMP_RS02970 0.36 +0.4
Or see this region's nucleotide sequence