Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02465 and MMP_RS02470 are separated by 365 nucleotides MMP_RS02470 and MMP_RS02475 are separated by 154 nucleotides MMP_RS02475 and MMP_RS02480 are separated by 98 nucleotides
MMP_RS02465: MMP_RS02465 - hypothetical protein, at 462,521 to 463,246
_RS02465
MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974
_RS02470
MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380
_RS02475
MMP_RS02480: MMP_RS02480 - hypothetical protein, at 464,479 to 464,997
_RS02480
Position (kb) 463
464 Strain fitness (log2 ratio) -1
0
1
2 at 462.729 kb on - strand, within MMP_RS02465 at 462.802 kb on - strand, within MMP_RS02465 at 462.802 kb on - strand, within MMP_RS02465 at 462.807 kb on + strand, within MMP_RS02465 at 462.875 kb on - strand, within MMP_RS02465 at 462.909 kb on - strand, within MMP_RS02465 at 462.909 kb on - strand, within MMP_RS02465 at 462.914 kb on - strand, within MMP_RS02465 at 462.914 kb on - strand, within MMP_RS02465 at 462.977 kb on + strand, within MMP_RS02465 at 463.029 kb on - strand, within MMP_RS02465 at 463.035 kb on - strand, within MMP_RS02465 at 463.047 kb on + strand, within MMP_RS02465 at 463.067 kb on - strand, within MMP_RS02465 at 463.085 kb on - strand, within MMP_RS02465 at 463.140 kb on - strand, within MMP_RS02465 at 463.145 kb on - strand, within MMP_RS02465 at 463.275 kb on - strand at 463.276 kb on + strand at 463.276 kb on + strand at 463.277 kb on - strand at 463.375 kb on + strand at 463.380 kb on - strand at 463.387 kb on - strand at 463.388 kb on + strand at 463.404 kb on - strand at 463.404 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.457 kb on - strand at 463.476 kb on - strand at 463.481 kb on - strand at 463.499 kb on - strand at 463.509 kb on - strand at 463.510 kb on + strand at 463.517 kb on - strand at 463.517 kb on - strand at 463.527 kb on - strand at 463.531 kb on - strand at 463.532 kb on + strand at 463.532 kb on + strand at 463.547 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.551 kb on - strand at 463.637 kb on + strand at 463.676 kb on + strand, within MMP_RS02470 at 463.819 kb on - strand, within MMP_RS02470 at 464.000 kb on + strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.009 kb on - strand at 464.010 kb on + strand at 464.011 kb on - strand at 464.012 kb on + strand at 464.032 kb on - strand at 464.103 kb on + strand at 464.103 kb on + strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.105 kb on - strand at 464.106 kb on + strand at 464.106 kb on + strand at 464.198 kb on - strand, within MMP_RS02475 at 464.199 kb on + strand, within MMP_RS02475 at 464.236 kb on - strand, within MMP_RS02475 at 464.364 kb on + strand at 464.455 kb on - strand at 464.676 kb on + strand, within MMP_RS02480 at 464.825 kb on - strand, within MMP_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 462,729 - MMP_RS02465 0.29 -0.4 462,802 - MMP_RS02465 0.39 +1.4 462,802 - MMP_RS02465 0.39 +0.1 462,807 + MMP_RS02465 0.39 +0.4 462,875 - MMP_RS02465 0.49 -0.3 462,909 - MMP_RS02465 0.53 -0.0 462,909 - MMP_RS02465 0.53 +0.0 462,914 - MMP_RS02465 0.54 +0.2 462,914 - MMP_RS02465 0.54 -0.4 462,977 + MMP_RS02465 0.63 -0.1 463,029 - MMP_RS02465 0.70 -0.5 463,035 - MMP_RS02465 0.71 -0.0 463,047 + MMP_RS02465 0.72 -0.4 463,067 - MMP_RS02465 0.75 -1.3 463,085 - MMP_RS02465 0.78 +0.4 463,140 - MMP_RS02465 0.85 +0.1 463,145 - MMP_RS02465 0.86 -0.0 463,275 - +0.1 463,276 + +0.1 463,276 + +0.3 463,277 - -0.1 463,375 + -0.3 463,380 - +0.1 463,387 - +0.2 463,388 + +2.3 463,404 - -0.4 463,404 - -0.3 463,457 - +0.2 463,457 - -0.4 463,457 - -0.2 463,476 - +0.1 463,481 - +0.1 463,499 - -0.4 463,509 - +0.6 463,510 + -0.2 463,517 - +1.2 463,517 - -0.2 463,527 - -0.7 463,531 - +0.2 463,532 + +0.5 463,532 + +0.7 463,547 - -0.3 463,551 - -0.0 463,551 - -0.1 463,551 - +0.0 463,637 + +0.1 463,676 + MMP_RS02470 0.18 +0.1 463,819 - MMP_RS02470 0.57 +0.7 464,000 + -0.8 464,009 - +0.8 464,009 - +0.5 464,009 - +0.7 464,010 + -0.3 464,011 - +0.4 464,012 + -0.6 464,032 - +0.7 464,103 + +0.3 464,103 + +0.0 464,105 - +0.2 464,105 - +0.0 464,105 - +0.2 464,106 + +0.2 464,106 + +0.5 464,198 - MMP_RS02475 0.27 +1.1 464,199 + MMP_RS02475 0.28 -0.3 464,236 - MMP_RS02475 0.42 +0.2 464,364 + -0.0 464,455 - -0.3 464,676 + MMP_RS02480 0.38 +0.2 464,825 - MMP_RS02480 0.67 -0.2
Or see this region's nucleotide sequence