Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02305 and MMP_RS02310 are separated by 266 nucleotides MMP_RS02310 and MMP_RS02315 are separated by 0 nucleotides MMP_RS02315 and MMP_RS02320 overlap by 14 nucleotides
MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763
_RS02305
MMP_RS02310: MMP_RS02310 - RimK-like ATPgrasp N-terminal domain-containing protein, at 435,030 to 435,635
_RS02310
MMP_RS02315: MMP_RS02315 - RimK family alpha-L-glutamate ligase, at 435,636 to 436,586
_RS02315
MMP_RS02320: MMP_RS02320 - glutamate-cysteine ligase family protein, at 436,573 to 437,676
_RS02320
Position (kb) 435
436
437 Strain fitness (log2 ratio) -1
0
1 at 434.653 kb on + strand, within MMP_RS02305 at 434.665 kb on - strand, within MMP_RS02305 at 434.679 kb on - strand, within MMP_RS02305 at 434.680 kb on + strand, within MMP_RS02305 at 434.680 kb on + strand, within MMP_RS02305 at 434.728 kb on + strand, within MMP_RS02305 at 434.803 kb on - strand at 434.803 kb on - strand at 435.312 kb on - strand, within MMP_RS02310 at 435.922 kb on + strand, within MMP_RS02315 at 436.008 kb on + strand, within MMP_RS02315 at 436.109 kb on + strand, within MMP_RS02315 at 436.278 kb on - strand, within MMP_RS02315 at 436.326 kb on + strand, within MMP_RS02315 at 436.408 kb on + strand, within MMP_RS02315 at 436.473 kb on - strand, within MMP_RS02315 at 436.491 kb on - strand, within MMP_RS02315 at 436.492 kb on + strand at 436.494 kb on + strand at 436.518 kb on - strand at 436.518 kb on - strand at 436.594 kb on - strand at 436.595 kb on + strand at 436.641 kb on + strand at 436.818 kb on - strand, within MMP_RS02320 at 436.818 kb on - strand, within MMP_RS02320 at 436.822 kb on + strand, within MMP_RS02320 at 436.822 kb on + strand, within MMP_RS02320 at 436.832 kb on - strand, within MMP_RS02320 at 436.925 kb on - strand, within MMP_RS02320 at 436.985 kb on + strand, within MMP_RS02320 at 437.007 kb on - strand, within MMP_RS02320 at 437.042 kb on + strand, within MMP_RS02320 at 437.097 kb on - strand, within MMP_RS02320 at 437.098 kb on + strand, within MMP_RS02320 at 437.483 kb on - strand, within MMP_RS02320 at 437.541 kb on + strand, within MMP_RS02320 at 437.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 434,653 + MMP_RS02305 0.55 -0.3 434,665 - MMP_RS02305 0.60 +0.2 434,679 - MMP_RS02305 0.66 -0.7 434,680 + MMP_RS02305 0.66 -0.3 434,680 + MMP_RS02305 0.66 -0.3 434,728 + MMP_RS02305 0.86 -0.1 434,803 - +0.2 434,803 - -0.5 435,312 - MMP_RS02310 0.47 +0.3 435,922 + MMP_RS02315 0.30 +0.2 436,008 + MMP_RS02315 0.39 -0.2 436,109 + MMP_RS02315 0.50 -0.1 436,278 - MMP_RS02315 0.68 +0.1 436,326 + MMP_RS02315 0.73 +0.3 436,408 + MMP_RS02315 0.81 +0.0 436,473 - MMP_RS02315 0.88 +0.7 436,491 - MMP_RS02315 0.90 +0.8 436,492 + +0.1 436,494 + +0.0 436,518 - -0.1 436,518 - +0.1 436,594 - -0.0 436,595 + -0.2 436,641 + +0.2 436,818 - MMP_RS02320 0.22 -0.3 436,818 - MMP_RS02320 0.22 -0.1 436,822 + MMP_RS02320 0.23 -0.1 436,822 + MMP_RS02320 0.23 +0.1 436,832 - MMP_RS02320 0.23 -0.1 436,925 - MMP_RS02320 0.32 +0.4 436,985 + MMP_RS02320 0.37 +0.0 437,007 - MMP_RS02320 0.39 -0.0 437,042 + MMP_RS02320 0.42 -0.0 437,097 - MMP_RS02320 0.47 -0.3 437,098 + MMP_RS02320 0.48 -0.0 437,483 - MMP_RS02320 0.82 -0.2 437,541 + MMP_RS02320 0.88 -0.0 437,586 - +0.0
Or see this region's nucleotide sequence