Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02210 and MMP_RS02215 are separated by 88 nucleotides MMP_RS02215 and MMP_RS02220 are separated by 207 nucleotides MMP_RS02220 and MMP_RS02225 are separated by 19 nucleotides
MMP_RS02210: MMP_RS02210 - bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase, at 416,131 to 417,777
_RS02210
MMP_RS02215: MMP_RS02215 - ECF transporter S component, at 417,866 to 418,462
_RS02215
MMP_RS02220: MMP_RS02220 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase, at 418,670 to 419,395
_RS02220
MMP_RS02225: MMP_RS02225 - carbohydrate kinase family protein, at 419,415 to 420,323
_RS02225
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 417.160 kb on + strand at 417.569 kb on - strand at 417.661 kb on - strand at 417.811 kb on - strand at 417.812 kb on + strand at 417.817 kb on - strand at 417.818 kb on + strand at 417.847 kb on + strand at 417.863 kb on + strand at 417.876 kb on - strand at 417.925 kb on + strand at 417.994 kb on - strand, within MMP_RS02215 at 418.097 kb on - strand, within MMP_RS02215 at 418.098 kb on + strand, within MMP_RS02215 at 418.111 kb on + strand, within MMP_RS02215 at 418.145 kb on + strand, within MMP_RS02215 at 418.194 kb on - strand, within MMP_RS02215 at 418.238 kb on - strand, within MMP_RS02215 at 418.279 kb on - strand, within MMP_RS02215 at 418.281 kb on - strand, within MMP_RS02215 at 418.281 kb on - strand, within MMP_RS02215 at 418.282 kb on + strand, within MMP_RS02215 at 418.290 kb on + strand, within MMP_RS02215 at 418.296 kb on - strand, within MMP_RS02215 at 418.296 kb on - strand, within MMP_RS02215 at 418.296 kb on - strand, within MMP_RS02215 at 418.326 kb on - strand, within MMP_RS02215 at 418.354 kb on + strand, within MMP_RS02215 at 418.381 kb on + strand, within MMP_RS02215 at 418.542 kb on - strand at 418.542 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.582 kb on - strand at 418.586 kb on - strand at 418.586 kb on - strand at 418.625 kb on - strand at 418.674 kb on - strand at 419.176 kb on + strand at 419.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 417,160 + -3.3 417,569 - -1.6 417,661 - -3.2 417,811 - +0.6 417,812 + +0.4 417,817 - +0.4 417,818 + +0.0 417,847 + -0.3 417,863 + -0.3 417,876 - -0.0 417,925 + -0.2 417,994 - MMP_RS02215 0.21 -0.1 418,097 - MMP_RS02215 0.39 -0.1 418,098 + MMP_RS02215 0.39 -0.0 418,111 + MMP_RS02215 0.41 -0.1 418,145 + MMP_RS02215 0.47 -0.0 418,194 - MMP_RS02215 0.55 -0.1 418,238 - MMP_RS02215 0.62 -0.1 418,279 - MMP_RS02215 0.69 -0.2 418,281 - MMP_RS02215 0.70 -0.4 418,281 - MMP_RS02215 0.70 +0.1 418,282 + MMP_RS02215 0.70 +0.4 418,290 + MMP_RS02215 0.71 -0.1 418,296 - MMP_RS02215 0.72 +0.2 418,296 - MMP_RS02215 0.72 +0.1 418,296 - MMP_RS02215 0.72 +0.2 418,326 - MMP_RS02215 0.77 -0.1 418,354 + MMP_RS02215 0.82 -0.3 418,381 + MMP_RS02215 0.86 +0.3 418,542 - -0.1 418,542 - +0.2 418,582 - +0.3 418,582 - +0.1 418,582 - -0.6 418,582 - -0.4 418,582 - -0.4 418,586 - -2.2 418,586 - -1.2 418,625 - -1.9 418,674 - -1.6 419,176 + -1.9 419,325 - -2.6
Or see this region's nucleotide sequence