Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01880 and MMP_RS01885 overlap by 1 nucleotides MMP_RS01885 and MMP_RS01890 are separated by 17 nucleotides
MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515
_RS01880
MMP_RS01885: MMP_RS01885 - Gfo/Idh/MocA family oxidoreductase, at 347,515 to 348,450
_RS01885
MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775
_RS01890
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 346.545 kb on - strand, within MMP_RS01880 at 346.645 kb on - strand, within MMP_RS01880 at 346.675 kb on + strand, within MMP_RS01880 at 346.724 kb on + strand, within MMP_RS01880 at 346.724 kb on + strand, within MMP_RS01880 at 346.776 kb on - strand, within MMP_RS01880 at 346.925 kb on + strand, within MMP_RS01880 at 346.964 kb on + strand, within MMP_RS01880 at 346.988 kb on + strand, within MMP_RS01880 at 347.020 kb on + strand, within MMP_RS01880 at 347.052 kb on - strand, within MMP_RS01880 at 347.053 kb on + strand, within MMP_RS01880 at 347.053 kb on + strand, within MMP_RS01880 at 347.056 kb on - strand, within MMP_RS01880 at 347.057 kb on + strand, within MMP_RS01880 at 347.057 kb on + strand, within MMP_RS01880 at 347.065 kb on + strand, within MMP_RS01880 at 347.090 kb on + strand, within MMP_RS01880 at 347.460 kb on - strand at 347.461 kb on + strand at 347.474 kb on - strand at 347.475 kb on + strand at 347.477 kb on + strand at 347.510 kb on + strand at 347.683 kb on - strand, within MMP_RS01885 at 347.685 kb on - strand, within MMP_RS01885 at 347.760 kb on + strand, within MMP_RS01885 at 347.792 kb on - strand, within MMP_RS01885 at 347.892 kb on - strand, within MMP_RS01885 at 347.914 kb on + strand, within MMP_RS01885 at 348.070 kb on + strand, within MMP_RS01885 at 348.156 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.161 kb on - strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.162 kb on + strand, within MMP_RS01885 at 348.181 kb on + strand, within MMP_RS01885 at 348.183 kb on - strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.184 kb on + strand, within MMP_RS01885 at 348.213 kb on + strand, within MMP_RS01885 at 348.217 kb on + strand, within MMP_RS01885 at 348.241 kb on - strand, within MMP_RS01885 at 348.273 kb on + strand, within MMP_RS01885 at 348.274 kb on - strand, within MMP_RS01885 at 348.275 kb on + strand, within MMP_RS01885 at 348.557 kb on - strand at 348.563 kb on + strand at 348.724 kb on - strand, within MMP_RS01890 at 348.725 kb on + strand, within MMP_RS01890 at 348.771 kb on + strand, within MMP_RS01890 at 348.775 kb on - strand, within MMP_RS01890 at 348.971 kb on - strand, within MMP_RS01890 at 349.041 kb on - strand, within MMP_RS01890 at 349.268 kb on - strand, within MMP_RS01890 at 349.294 kb on - strand, within MMP_RS01890 at 349.370 kb on + strand, within MMP_RS01890 at 349.384 kb on - strand, within MMP_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 346,545 - MMP_RS01880 0.12 +0.1 346,645 - MMP_RS01880 0.21 +0.7 346,675 + MMP_RS01880 0.24 -0.5 346,724 + MMP_RS01880 0.28 +0.1 346,724 + MMP_RS01880 0.28 +0.9 346,776 - MMP_RS01880 0.33 +0.4 346,925 + MMP_RS01880 0.46 +0.2 346,964 + MMP_RS01880 0.50 +0.2 346,988 + MMP_RS01880 0.52 +0.4 347,020 + MMP_RS01880 0.55 +0.7 347,052 - MMP_RS01880 0.58 +0.2 347,053 + MMP_RS01880 0.58 +0.1 347,053 + MMP_RS01880 0.58 +0.5 347,056 - MMP_RS01880 0.58 +0.0 347,057 + MMP_RS01880 0.58 +0.2 347,057 + MMP_RS01880 0.58 +1.7 347,065 + MMP_RS01880 0.59 -0.3 347,090 + MMP_RS01880 0.61 -0.1 347,460 - +0.4 347,461 + +1.0 347,474 - +0.3 347,475 + -0.1 347,477 + +0.6 347,510 + +0.2 347,683 - MMP_RS01885 0.18 +0.1 347,685 - MMP_RS01885 0.18 -0.1 347,760 + MMP_RS01885 0.26 +0.0 347,792 - MMP_RS01885 0.30 +0.8 347,892 - MMP_RS01885 0.40 +0.5 347,914 + MMP_RS01885 0.43 +0.3 348,070 + MMP_RS01885 0.59 +0.8 348,156 - MMP_RS01885 0.68 -0.1 348,161 - MMP_RS01885 0.69 -0.3 348,161 - MMP_RS01885 0.69 -0.1 348,162 + MMP_RS01885 0.69 +0.2 348,162 + MMP_RS01885 0.69 +1.9 348,162 + MMP_RS01885 0.69 +0.1 348,181 + MMP_RS01885 0.71 -0.0 348,183 - MMP_RS01885 0.71 +0.1 348,184 + MMP_RS01885 0.71 +0.5 348,184 + MMP_RS01885 0.71 +0.1 348,213 + MMP_RS01885 0.75 -0.2 348,217 + MMP_RS01885 0.75 +0.0 348,241 - MMP_RS01885 0.78 -0.0 348,273 + MMP_RS01885 0.81 +0.5 348,274 - MMP_RS01885 0.81 +0.7 348,275 + MMP_RS01885 0.81 +1.0 348,557 - -1.0 348,563 + +0.3 348,724 - MMP_RS01890 0.20 -0.1 348,725 + MMP_RS01890 0.20 -0.9 348,771 + MMP_RS01890 0.23 -0.5 348,775 - MMP_RS01890 0.23 -1.8 348,971 - MMP_RS01890 0.38 -0.5 349,041 - MMP_RS01890 0.44 -0.2 349,268 - MMP_RS01890 0.61 +3.7 349,294 - MMP_RS01890 0.63 +1.2 349,370 + MMP_RS01890 0.69 -0.5 349,384 - MMP_RS01890 0.70 +1.0
Or see this region's nucleotide sequence