Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00240

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00230 and MMP_RS00235 are separated by 10 nucleotidesMMP_RS00235 and MMP_RS00240 are separated by 26 nucleotidesMMP_RS00240 and MMP_RS00245 are separated by 4 nucleotides MMP_RS00230: MMP_RS00230 - transcription factor E, at 53,793 to 54,350 _RS00230 MMP_RS00235: MMP_RS00235 - HDIG domain-containing protein, at 54,361 to 54,948 _RS00235 MMP_RS00240: MMP_RS00240 - type II secretion system F family protein, at 54,975 to 55,871 _RS00240 MMP_RS00245: MMP_RS00245 - type II secretion system F family protein, at 55,876 to 56,934 _RS00245 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 54.016 kb on + strandat 54.054 kb on - strandat 54.055 kb on + strandat 54.140 kb on + strandat 54.155 kb on - strandat 54.225 kb on + strandat 54.252 kb on - strandat 54.253 kb on + strandat 54.307 kb on - strandat 54.342 kb on + strandat 54.345 kb on - strandat 54.345 kb on - strandat 54.345 kb on - strandat 54.360 kb on - strandat 54.361 kb on + strandat 54.367 kb on + strandat 54.386 kb on - strandat 54.386 kb on - strandat 54.396 kb on - strandat 54.402 kb on + strandat 54.402 kb on + strandat 54.402 kb on + strandat 54.441 kb on + strand, within MMP_RS00235at 54.444 kb on - strand, within MMP_RS00235at 54.551 kb on - strand, within MMP_RS00235at 54.575 kb on - strand, within MMP_RS00235at 54.647 kb on - strand, within MMP_RS00235at 54.662 kb on - strand, within MMP_RS00235at 54.666 kb on + strand, within MMP_RS00235at 54.668 kb on - strand, within MMP_RS00235at 54.692 kb on + strand, within MMP_RS00235at 54.732 kb on - strand, within MMP_RS00235at 54.772 kb on - strand, within MMP_RS00235at 54.773 kb on + strand, within MMP_RS00235at 54.821 kb on - strand, within MMP_RS00235at 54.907 kb on - strandat 54.920 kb on - strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.931 kb on + strandat 54.936 kb on + strandat 54.947 kb on + strandat 54.947 kb on + strandat 54.977 kb on + strandat 54.977 kb on + strandat 54.984 kb on - strandat 54.996 kb on + strandat 55.005 kb on - strandat 55.005 kb on - strandat 55.041 kb on - strandat 55.042 kb on + strandat 55.052 kb on - strandat 55.057 kb on + strandat 55.065 kb on + strand, within MMP_RS00240at 55.068 kb on - strand, within MMP_RS00240at 55.150 kb on + strand, within MMP_RS00240at 55.254 kb on - strand, within MMP_RS00240at 55.290 kb on - strand, within MMP_RS00240at 55.369 kb on - strand, within MMP_RS00240at 55.410 kb on - strand, within MMP_RS00240at 55.440 kb on - strand, within MMP_RS00240at 55.440 kb on - strand, within MMP_RS00240at 55.440 kb on - strand, within MMP_RS00240at 55.441 kb on + strand, within MMP_RS00240at 55.441 kb on + strand, within MMP_RS00240at 55.441 kb on + strand, within MMP_RS00240at 55.484 kb on - strand, within MMP_RS00240at 55.504 kb on + strand, within MMP_RS00240at 55.504 kb on + strand, within MMP_RS00240at 55.530 kb on - strand, within MMP_RS00240at 55.531 kb on + strand, within MMP_RS00240at 55.591 kb on - strand, within MMP_RS00240at 55.591 kb on - strand, within MMP_RS00240at 55.592 kb on + strand, within MMP_RS00240at 55.592 kb on + strand, within MMP_RS00240at 55.601 kb on - strand, within MMP_RS00240at 55.607 kb on - strand, within MMP_RS00240at 55.639 kb on - strand, within MMP_RS00240at 55.672 kb on + strand, within MMP_RS00240at 55.678 kb on + strand, within MMP_RS00240at 55.698 kb on + strand, within MMP_RS00240at 55.831 kb on + strandat 55.840 kb on - strandat 55.840 kb on - strandat 55.840 kb on - strandat 55.842 kb on - strandat 55.842 kb on - strandat 55.842 kb on - strandat 55.842 kb on - strandat 55.842 kb on - strandat 55.843 kb on + strandat 55.844 kb on - strandat 55.844 kb on - strandat 55.844 kb on - strandat 55.844 kb on - strandat 55.845 kb on + strandat 55.851 kb on - strandat 55.852 kb on + strandat 55.855 kb on - strandat 55.906 kb on + strandat 55.906 kb on + strandat 55.909 kb on - strandat 56.151 kb on - strand, within MMP_RS00245at 56.152 kb on + strand, within MMP_RS00245at 56.193 kb on - strand, within MMP_RS00245at 56.194 kb on + strand, within MMP_RS00245at 56.194 kb on + strand, within MMP_RS00245at 56.197 kb on - strand, within MMP_RS00245at 56.198 kb on + strand, within MMP_RS00245at 56.202 kb on - strand, within MMP_RS00245at 56.242 kb on + strand, within MMP_RS00245at 56.242 kb on + strand, within MMP_RS00245at 56.266 kb on - strand, within MMP_RS00245at 56.267 kb on + strand, within MMP_RS00245at 56.268 kb on - strand, within MMP_RS00245at 56.272 kb on + strand, within MMP_RS00245at 56.356 kb on - strand, within MMP_RS00245at 56.367 kb on - strand, within MMP_RS00245at 56.374 kb on - strand, within MMP_RS00245at 56.375 kb on + strand, within MMP_RS00245at 56.375 kb on + strand, within MMP_RS00245at 56.377 kb on - strand, within MMP_RS00245at 56.443 kb on - strand, within MMP_RS00245at 56.444 kb on + strand, within MMP_RS00245at 56.461 kb on + strand, within MMP_RS00245at 56.464 kb on + strand, within MMP_RS00245at 56.501 kb on + strand, within MMP_RS00245at 56.576 kb on - strand, within MMP_RS00245at 56.577 kb on + strand, within MMP_RS00245at 56.590 kb on - strand, within MMP_RS00245at 56.591 kb on + strand, within MMP_RS00245at 56.591 kb on + strand, within MMP_RS00245at 56.595 kb on - strand, within MMP_RS00245at 56.620 kb on + strand, within MMP_RS00245at 56.644 kb on + strand, within MMP_RS00245at 56.644 kb on + strand, within MMP_RS00245at 56.651 kb on - strand, within MMP_RS00245at 56.707 kb on - strand, within MMP_RS00245at 56.708 kb on + strand, within MMP_RS00245at 56.716 kb on - strand, within MMP_RS00245at 56.717 kb on + strand, within MMP_RS00245at 56.717 kb on + strand, within MMP_RS00245at 56.725 kb on + strand, within MMP_RS00245at 56.725 kb on + strand, within MMP_RS00245at 56.728 kb on - strand, within MMP_RS00245at 56.749 kb on + strand, within MMP_RS00245at 56.749 kb on + strand, within MMP_RS00245at 56.750 kb on - strand, within MMP_RS00245at 56.751 kb on + strand, within MMP_RS00245at 56.759 kb on - strand, within MMP_RS00245at 56.760 kb on + strand, within MMP_RS00245at 56.760 kb on + strand, within MMP_RS00245at 56.768 kb on + strand, within MMP_RS00245at 56.781 kb on - strand, within MMP_RS00245at 56.781 kb on - strand, within MMP_RS00245at 56.781 kb on - strand, within MMP_RS00245at 56.782 kb on + strand, within MMP_RS00245at 56.785 kb on - strand, within MMP_RS00245at 56.785 kb on - strand, within MMP_RS00245at 56.785 kb on - strand, within MMP_RS00245at 56.785 kb on - strand, within MMP_RS00245at 56.786 kb on + strand, within MMP_RS00245at 56.786 kb on + strand, within MMP_RS00245at 56.786 kb on + strand, within MMP_RS00245at 56.786 kb on + strand, within MMP_RS00245at 56.788 kb on + strand, within MMP_RS00245at 56.822 kb on - strand, within MMP_RS00245at 56.842 kb on + strandat 56.842 kb on + strandat 56.846 kb on + strandat 56.868 kb on - strandat 56.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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54,016 + -1.7
54,054 - -2.6
54,055 + -2.2
54,140 + -1.2
54,155 - -1.4
54,225 + -2.8
54,252 - -3.5
54,253 + -2.2
54,307 - -0.9
54,342 + -0.1
54,345 - -0.6
54,345 - -0.8
54,345 - +0.4
54,360 - +0.0
54,361 + -0.1
54,367 + +0.3
54,386 - -0.4
54,386 - -0.6
54,396 - -0.3
54,402 + -0.3
54,402 + +0.2
54,402 + -0.3
54,441 + MMP_RS00235 0.14 +0.0
54,444 - MMP_RS00235 0.14 -0.2
54,551 - MMP_RS00235 0.32 +0.0
54,575 - MMP_RS00235 0.36 -0.1
54,647 - MMP_RS00235 0.49 -0.1
54,662 - MMP_RS00235 0.51 -0.3
54,666 + MMP_RS00235 0.52 +0.1
54,668 - MMP_RS00235 0.52 +0.2
54,692 + MMP_RS00235 0.56 +0.3
54,732 - MMP_RS00235 0.63 -0.3
54,772 - MMP_RS00235 0.70 +0.2
54,773 + MMP_RS00235 0.70 -0.1
54,821 - MMP_RS00235 0.78 -0.1
54,907 - +0.4
54,920 - -0.3
54,930 - +0.1
54,930 - +0.8
54,930 - -0.6
54,931 + +0.1
54,936 + +0.2
54,947 + +0.2
54,947 + +0.2
54,977 + +0.3
54,977 + -0.3
54,984 - -0.1
54,996 + -0.1
55,005 - +0.6
55,005 - +0.1
55,041 - +0.0
55,042 + +0.1
55,052 - +0.3
55,057 + +0.1
55,065 + MMP_RS00240 0.10 +0.3
55,068 - MMP_RS00240 0.10 +0.2
55,150 + MMP_RS00240 0.20 -0.1
55,254 - MMP_RS00240 0.31 +0.3
55,290 - MMP_RS00240 0.35 -0.2
55,369 - MMP_RS00240 0.44 +0.1
55,410 - MMP_RS00240 0.48 +0.2
55,440 - MMP_RS00240 0.52 +0.0
55,440 - MMP_RS00240 0.52 +0.1
55,440 - MMP_RS00240 0.52 +0.9
55,441 + MMP_RS00240 0.52 +0.3
55,441 + MMP_RS00240 0.52 +0.2
55,441 + MMP_RS00240 0.52 -0.0
55,484 - MMP_RS00240 0.57 +0.2
55,504 + MMP_RS00240 0.59 -0.1
55,504 + MMP_RS00240 0.59 -0.3
55,530 - MMP_RS00240 0.62 +0.5
55,531 + MMP_RS00240 0.62 -0.2
55,591 - MMP_RS00240 0.69 +0.2
55,591 - MMP_RS00240 0.69 +0.5
55,592 + MMP_RS00240 0.69 +0.1
55,592 + MMP_RS00240 0.69 +0.1
55,601 - MMP_RS00240 0.70 +0.7
55,607 - MMP_RS00240 0.70 +0.2
55,639 - MMP_RS00240 0.74 +0.5
55,672 + MMP_RS00240 0.78 +0.4
55,678 + MMP_RS00240 0.78 -0.0
55,698 + MMP_RS00240 0.81 -0.1
55,831 + -0.1
55,840 - -0.2
55,840 - -0.1
55,840 - -0.2
55,842 - +0.7
55,842 - -0.0
55,842 - +0.3
55,842 - -0.0
55,842 - -0.1
55,843 + -0.0
55,844 - +0.3
55,844 - -0.3
55,844 - -0.1
55,844 - -0.1
55,845 + -0.1
55,851 - -0.3
55,852 + +0.1
55,855 - +0.2
55,906 + -0.2
55,906 + -0.1
55,909 - +0.0
56,151 - MMP_RS00245 0.26 +0.0
56,152 + MMP_RS00245 0.26 +0.3
56,193 - MMP_RS00245 0.30 +0.1
56,194 + MMP_RS00245 0.30 -0.2
56,194 + MMP_RS00245 0.30 +0.6
56,197 - MMP_RS00245 0.30 +0.1
56,198 + MMP_RS00245 0.30 +0.7
56,202 - MMP_RS00245 0.31 +0.2
56,242 + MMP_RS00245 0.35 +0.5
56,242 + MMP_RS00245 0.35 +0.2
56,266 - MMP_RS00245 0.37 -0.1
56,267 + MMP_RS00245 0.37 -0.2
56,268 - MMP_RS00245 0.37 -0.8
56,272 + MMP_RS00245 0.37 +0.6
56,356 - MMP_RS00245 0.45 -0.1
56,367 - MMP_RS00245 0.46 -0.1
56,374 - MMP_RS00245 0.47 +0.0
56,375 + MMP_RS00245 0.47 +0.1
56,375 + MMP_RS00245 0.47 +0.3
56,377 - MMP_RS00245 0.47 -0.2
56,443 - MMP_RS00245 0.54 -0.1
56,444 + MMP_RS00245 0.54 -0.0
56,461 + MMP_RS00245 0.55 +0.3
56,464 + MMP_RS00245 0.56 +0.1
56,501 + MMP_RS00245 0.59 +0.9
56,576 - MMP_RS00245 0.66 +0.4
56,577 + MMP_RS00245 0.66 +0.3
56,590 - MMP_RS00245 0.67 -0.7
56,591 + MMP_RS00245 0.68 +0.1
56,591 + MMP_RS00245 0.68 +0.7
56,595 - MMP_RS00245 0.68 -0.2
56,620 + MMP_RS00245 0.70 +1.0
56,644 + MMP_RS00245 0.73 +0.3
56,644 + MMP_RS00245 0.73 -0.2
56,651 - MMP_RS00245 0.73 -0.1
56,707 - MMP_RS00245 0.78 +0.2
56,708 + MMP_RS00245 0.79 -0.2
56,716 - MMP_RS00245 0.79 -0.3
56,717 + MMP_RS00245 0.79 -1.3
56,717 + MMP_RS00245 0.79 -0.7
56,725 + MMP_RS00245 0.80 +0.4
56,725 + MMP_RS00245 0.80 +0.3
56,728 - MMP_RS00245 0.80 -0.3
56,749 + MMP_RS00245 0.82 -0.2
56,749 + MMP_RS00245 0.82 +0.9
56,750 - MMP_RS00245 0.83 +0.0
56,751 + MMP_RS00245 0.83 +0.3
56,759 - MMP_RS00245 0.83 +0.4
56,760 + MMP_RS00245 0.83 -0.3
56,760 + MMP_RS00245 0.83 +0.0
56,768 + MMP_RS00245 0.84 -0.0
56,781 - MMP_RS00245 0.85 -0.4
56,781 - MMP_RS00245 0.85 +0.0
56,781 - MMP_RS00245 0.85 -0.0
56,782 + MMP_RS00245 0.86 -0.4
56,785 - MMP_RS00245 0.86 +0.0
56,785 - MMP_RS00245 0.86 +0.3
56,785 - MMP_RS00245 0.86 -0.1
56,785 - MMP_RS00245 0.86 +0.1
56,786 + MMP_RS00245 0.86 -0.2
56,786 + MMP_RS00245 0.86 -0.1
56,786 + MMP_RS00245 0.86 +0.3
56,786 + MMP_RS00245 0.86 +0.8
56,788 + MMP_RS00245 0.86 +0.5
56,822 - MMP_RS00245 0.89 -0.3
56,842 + -0.4
56,842 + -0.2
56,846 + +0.4
56,868 - +0.1
56,869 + -0.1

Or see this region's nucleotide sequence