Strain Fitness in Pantoea sp. MT58 around IAI47_05895

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,209,569	+		IAI47_05885	0.87	-0.9
1,209,569	+		IAI47_05885	0.87	+2.3
1,209,569	+		IAI47_05885	0.87	-0.9
1,209,570	-		IAI47_05885	0.87	+0.1
1,209,570	-		IAI47_05885	0.87	+2.0
1,209,570	-		IAI47_05885	0.87	+0.2
1,209,570	-		IAI47_05885	0.87	-0.1
1,209,570	-		IAI47_05885	0.87	-1.1
1,209,583	+				-0.4
1,209,600	+				+2.4
1,209,604	-				+0.9
1,209,633	+				-3.4
1,209,633	+				+0.5
1,209,634	-				+0.2
1,209,643	+				-1.9
1,209,650	+				-0.6
1,209,650	+				-1.2
1,209,651	-				+2.1
1,209,651	-				-0.4
1,209,655	+				+1.0
1,209,655	+				-1.1
1,209,656	-				-0.7
1,209,666	+				-1.2
1,209,674	+				+0.2
1,209,675	-				+0.6
1,209,781	+		IAI47_05890	0.12	+1.2
1,209,782	-		IAI47_05890	0.12	-1.4
1,209,782	-		IAI47_05890	0.12	+0.2
1,209,788	-		IAI47_05890	0.12	+2.0
1,209,788	-		IAI47_05890	0.12	+0.7
1,209,878	+		IAI47_05890	0.25	+0.5
1,209,878	+		IAI47_05890	0.25	+2.6
1,209,878	+		IAI47_05890	0.25	+0.6
1,209,879	-		IAI47_05890	0.25	+3.0
1,209,881	+		IAI47_05890	0.25	+0.8
1,209,881	+		IAI47_05890	0.25	-0.4
1,209,882	-		IAI47_05890	0.25	-0.6
1,209,882	-		IAI47_05890	0.25	-2.3
1,209,882	-		IAI47_05890	0.25	-1.4
1,209,899	+		IAI47_05890	0.28	-1.4
1,209,935	-		IAI47_05890	0.32	+2.3
1,210,049	+		IAI47_05890	0.48	-0.2
1,210,050	-		IAI47_05890	0.48	-0.1
1,210,064	+		IAI47_05890	0.50	-2.6
1,210,065	-		IAI47_05890	0.50	-0.8
1,210,083	+		IAI47_05890	0.52	-0.9
1,210,084	-		IAI47_05890	0.53	+1.0
1,210,084	-		IAI47_05890	0.53	+1.5
1,210,122	-		IAI47_05890	0.58	+0.5
1,210,137	-		IAI47_05890	0.60	+0.0
1,210,137	-		IAI47_05890	0.60	+2.0
1,210,165	+		IAI47_05890	0.64	+0.3
1,210,165	+		IAI47_05890	0.64	+0.5
1,210,165	+		IAI47_05890	0.64	-0.1
1,210,165	+		IAI47_05890	0.64	-0.9
1,210,165	+		IAI47_05890	0.64	-1.2
1,210,165	+		IAI47_05890	0.64	-0.9
1,210,166	-		IAI47_05890	0.64	-0.9
1,210,169	+		IAI47_05890	0.64	-0.6
1,210,169	+		IAI47_05890	0.64	-1.2
1,210,170	-		IAI47_05890	0.64	-0.6
1,210,170	-		IAI47_05890	0.64	+2.1
1,210,170	-		IAI47_05890	0.64	-0.3
1,210,170	-		IAI47_05890	0.64	-0.8
1,210,174	+		IAI47_05890	0.65	-0.5
1,210,174	+		IAI47_05890	0.65	-0.0
1,210,174	+		IAI47_05890	0.65	-1.2
1,210,174	+		IAI47_05890	0.65	-0.5
1,210,175	-		IAI47_05890	0.65	+1.7
1,210,175	-		IAI47_05890	0.65	+0.9
1,210,175	-		IAI47_05890	0.65	-0.1
1,210,185	-		IAI47_05890	0.66	-2.4
1,210,188	+		IAI47_05890	0.67	+0.5
1,210,189	-		IAI47_05890	0.67	-0.3
1,210,245	+		IAI47_05890	0.74	-0.0
1,210,245	+		IAI47_05890	0.74	-0.2
1,210,245	+		IAI47_05890	0.74	+0.3
1,210,250	+		IAI47_05890	0.75	-0.9
1,210,250	+		IAI47_05890	0.75	+1.5
1,210,251	-		IAI47_05890	0.75	-0.6
1,210,322	+		IAI47_05890	0.85	-1.7
1,210,322	+		IAI47_05890	0.85	+3.0
1,210,323	-		IAI47_05890	0.85	+1.2
1,210,330	+		IAI47_05890	0.86	+0.3
1,210,331	-		IAI47_05890	0.86	+3.7
1,210,374	-				+0.2
1,210,375	+				+1.2
1,210,375	+				-0.4
1,210,391	+				-0.3
1,210,391	+				+0.7
1,210,391	+				+1.4
1,210,392	-				+1.0
1,210,392	-				+0.6
1,210,405	+				-4.7
1,210,405	+				+4.4
1,210,405	+				-1.7
1,210,405	+				+3.2
1,210,405	+				+0.1
1,210,405	+				-1.4
1,210,405	+				+0.3
1,210,406	-				-0.5
1,210,406	-				+1.5
1,210,406	-				+0.8
1,210,406	-				-1.4
1,210,406	-				-0.4
1,210,406	-				-0.0
1,210,406	-				-0.6
1,210,448	+				-1.0
1,210,448	+				+0.8
1,210,454	+				-0.7
1,210,479	-				+1.2
1,210,511	-				-0.2
1,210,517	+				-0.7
1,210,517	+				+1.5
1,210,517	+				+2.6
1,210,517	+				-2.0
1,210,517	+				-3.5
1,210,518	-				-0.1
1,210,518	-				+0.5
1,210,537	+				-0.3
1,210,537	+				-2.5
1,210,537	+				+0.1
1,210,538	-				-1.9
1,210,538	-				+0.3
1,210,539	+				-1.5
1,210,539	+				-0.5
1,210,539	+				-0.7
1,210,539	+				-1.0
1,210,540	-				-0.9
1,210,540	-				-0.3
1,210,577	+		IAI47_05895	0.23	+0.5
1,210,577	+		IAI47_05895	0.23	-0.5
1,210,578	-		IAI47_05895	0.23	+0.0
1,210,578	-		IAI47_05895	0.23	-0.9
1,210,578	-		IAI47_05895	0.23	+1.0
1,210,666	+		IAI47_05895	0.56	+0.3
1,210,666	+		IAI47_05895	0.56	+3.1
1,210,746	-		IAI47_05895	0.85	+0.6
1,210,755	+		IAI47_05895	0.89	+3.3
1,210,755	+		IAI47_05895	0.89	+2.3
1,210,755	+		IAI47_05895	0.89	+0.5
1,210,756	-		IAI47_05895	0.89	+0.8
1,210,756	-		IAI47_05895	0.89	-1.5
1,210,757	+		IAI47_05895	0.89	-1.6
1,210,757	+		IAI47_05895	0.89	+2.3
1,210,766	-				+2.2
1,210,811	+				-1.8
1,210,811	+				+2.7
1,210,811	+				-0.1
1,210,811	+				+0.2
1,210,811	+				-0.1
1,210,812	-				-3.9
1,210,812	-				-0.1
1,210,812	-				+0.7
1,210,812	-				-1.5
1,210,818	+				+0.3
1,210,818	+				-0.2
1,210,830	+				-0.1
1,210,831	-				-0.3
1,210,831	-				-0.4
1,210,831	-				+0.7
1,210,831	-				-1.0
1,210,834	+				-1.5
1,210,838	+				-1.5
1,210,839	-				-0.6
1,210,844	-				-0.4
1,210,858	+				+0.8
1,210,859	-				+0.6
1,210,862	+				+0.5
1,210,862	+				-1.5
1,210,862	+				+1.8
1,210,863	-				-2.1
1,210,906	-				+1.4
1,210,918	+				-0.9
1,210,937	+		IAI47_05900	0.13	-0.7
1,210,937	+		IAI47_05900	0.13	-0.1
1,210,938	-		IAI47_05900	0.13	-0.9
1,210,938	-		IAI47_05900	0.13	+1.4
1,210,938	-		IAI47_05900	0.13	-0.1
1,210,950	+		IAI47_05900	0.15	+0.9
1,210,951	-		IAI47_05900	0.16	+0.2
1,210,994	+		IAI47_05900	0.23	-1.0
1,210,994	+		IAI47_05900	0.23	-1.6
1,210,995	-		IAI47_05900	0.23	+1.6
1,210,995	-		IAI47_05900	0.23	+0.4
1,211,027	+		IAI47_05900	0.29	+0.4
1,211,028	-		IAI47_05900	0.29	-0.7
1,211,067	+		IAI47_05900	0.36	+0.0
1,211,067	+		IAI47_05900	0.36	+0.9
1,211,067	+		IAI47_05900	0.36	+2.4
1,211,067	+		IAI47_05900	0.36	+1.3
1,211,067	+		IAI47_05900	0.36	+2.3
1,211,067	+		IAI47_05900	0.36	-1.2
1,211,067	+		IAI47_05900	0.36	+0.9
1,211,067	+		IAI47_05900	0.36	+1.3
1,211,067	+		IAI47_05900	0.36	-1.0
1,211,068	-		IAI47_05900	0.36	-0.5
1,211,068	-		IAI47_05900	0.36	-1.6
1,211,068	-		IAI47_05900	0.36	-0.1
1,211,068	-		IAI47_05900	0.36	-0.3
1,211,068	-		IAI47_05900	0.36	+0.6
1,211,068	-		IAI47_05900	0.36	+0.3
1,211,068	-		IAI47_05900	0.36	-1.7
1,211,068	-		IAI47_05900	0.36	+2.1
1,211,068	-		IAI47_05900	0.36	+1.7
1,211,068	-		IAI47_05900	0.36	+0.7
1,211,086	+		IAI47_05900	0.39	+0.8
1,211,129	+		IAI47_05900	0.47	+2.4
1,211,129	+		IAI47_05900	0.47	+0.4
1,211,129	+		IAI47_05900	0.47	-1.7
1,211,129	+		IAI47_05900	0.47	-0.9
1,211,130	-		IAI47_05900	0.47	+1.6
1,211,130	-		IAI47_05900	0.47	+0.1
1,211,130	-		IAI47_05900	0.47	-0.0
1,211,138	+		IAI47_05900	0.49	-0.6
1,211,138	+		IAI47_05900	0.49	+0.0
1,211,138	+		IAI47_05900	0.49	+0.1
1,211,138	+		IAI47_05900	0.49	+1.1
1,211,138	+		IAI47_05900	0.49	-0.1
1,211,138	+		IAI47_05900	0.49	+0.8
1,211,138	+		IAI47_05900	0.49	-0.8
1,211,138	+		IAI47_05900	0.49	+1.5
1,211,139	-		IAI47_05900	0.49	-0.4
1,211,139	-		IAI47_05900	0.49	-1.0
1,211,139	-		IAI47_05900	0.49	+1.3
1,211,139	-		IAI47_05900	0.49	-0.9
1,211,146	+		IAI47_05900	0.50	+1.0
1,211,146	+		IAI47_05900	0.50	-1.9
1,211,147	-		IAI47_05900	0.50	+0.2
1,211,181	-		IAI47_05900	0.56	+1.5
1,211,274	-		IAI47_05900	0.72	-2.3
1,211,330	+		IAI47_05900	0.82	+1.0
1,211,330	+		IAI47_05900	0.82	+0.9
1,211,344	+		IAI47_05900	0.85	-1.2
1,211,345	-		IAI47_05900	0.85	+0.6
1,211,345	-		IAI47_05900	0.85	-1.7
1,211,387	+				+1.9
1,211,387	+				+0.3
1,211,387	+				-1.4
1,211,388	-				-0.1
1,211,427	+				+2.0
1,211,428	-				-0.0
1,211,428	-				+1.4
1,211,439	+				-0.3
1,211,439	+				-2.6
1,211,440	-				-2.5
1,211,470	+				-2.6
1,211,472	+				-0.2
1,211,472	+				+0.2
1,211,472	+				+1.7
1,211,472	+				+1.4
1,211,472	+				+1.8
1,211,472	+				-0.0
1,211,472	+				+2.0
1,211,472	+				+0.4
1,211,472	+				+0.4
1,211,472	+				+1.4
1,211,473	-				+0.2
1,211,473	-				-1.1
1,211,473	-				-0.9
1,211,473	-				+2.4
1,211,473	-				-3.1
1,211,473	-				-0.7
1,211,561	+		IAI47_05905	0.13	+0.0
1,211,561	+		IAI47_05905	0.13	-0.8
1,211,561	+		IAI47_05905	0.13	-0.1
1,211,562	-		IAI47_05905	0.13	-0.9
1,211,569	-		IAI47_05905	0.14	-1.6
1,211,603	+		IAI47_05905	0.16	-0.9
1,211,604	-		IAI47_05905	0.16	+0.2
1,211,604	-		IAI47_05905	0.16	+0.2
1,211,604	-		IAI47_05905	0.16	+1.2
1,211,612	+		IAI47_05905	0.17	-2.4
1,211,612	+		IAI47_05905	0.17	+0.1
1,211,613	-		IAI47_05905	0.17	+0.4
1,211,613	-		IAI47_05905	0.17	+0.7
1,211,613	-		IAI47_05905	0.17	-3.3
1,211,629	+		IAI47_05905	0.18	-2.1
1,211,643	+		IAI47_05905	0.20	+1.0
1,211,753	+		IAI47_05905	0.29	-0.8
1,211,753	+		IAI47_05905	0.29	-0.9
1,211,754	-		IAI47_05905	0.29	+2.3