Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04585 and IAI47_04590 overlap by 11 nucleotides IAI47_04590 and IAI47_04595 overlap by 4 nucleotides IAI47_04595 and IAI47_04600 overlap by 1 nucleotides
IAI47_04585: IAI47_04585 - ABC transporter ATP-binding protein, at 964,061 to 964,891
_04585
IAI47_04590: IAI47_04590 - ABC transporter permease, at 964,881 to 965,738
_04590
IAI47_04595: IAI47_04595 - ABC transporter permease, at 965,735 to 966,787
_04595
IAI47_04600: IAI47_04600 - ABC transporter substrate-binding protein, at 966,787 to 968,355
_04600
Position (kb) 965
966
967 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 964.882 kb on + strand at 964.883 kb on - strand at 964.934 kb on + strand at 965.093 kb on + strand, within IAI47_04590 at 965.154 kb on - strand, within IAI47_04590 at 965.154 kb on - strand, within IAI47_04590 at 965.165 kb on + strand, within IAI47_04590 at 965.166 kb on - strand, within IAI47_04590 at 965.166 kb on - strand, within IAI47_04590 at 965.166 kb on - strand, within IAI47_04590 at 965.166 kb on - strand, within IAI47_04590 at 965.180 kb on + strand, within IAI47_04590 at 965.180 kb on + strand, within IAI47_04590 at 965.180 kb on + strand, within IAI47_04590 at 965.210 kb on - strand, within IAI47_04590 at 965.469 kb on + strand, within IAI47_04590 at 965.470 kb on - strand, within IAI47_04590 at 965.707 kb on - strand at 965.765 kb on + strand at 965.765 kb on + strand at 965.785 kb on + strand at 965.786 kb on - strand at 965.866 kb on + strand, within IAI47_04595 at 965.866 kb on + strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.867 kb on - strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.868 kb on + strand, within IAI47_04595 at 965.869 kb on - strand, within IAI47_04595 at 965.869 kb on - strand, within IAI47_04595 at 965.869 kb on - strand, within IAI47_04595 at 965.934 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.981 kb on + strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.982 kb on - strand, within IAI47_04595 at 965.983 kb on + strand, within IAI47_04595 at 965.983 kb on + strand, within IAI47_04595 at 965.983 kb on + strand, within IAI47_04595 at 965.983 kb on + strand, within IAI47_04595 at 965.983 kb on + strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 965.984 kb on - strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.039 kb on + strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.040 kb on - strand, within IAI47_04595 at 966.047 kb on - strand, within IAI47_04595 at 966.047 kb on - strand, within IAI47_04595 at 966.047 kb on - strand, within IAI47_04595 at 966.047 kb on - strand, within IAI47_04595 at 966.217 kb on + strand, within IAI47_04595 at 966.217 kb on + strand, within IAI47_04595 at 966.219 kb on + strand, within IAI47_04595 at 966.219 kb on + strand, within IAI47_04595 at 966.219 kb on + strand, within IAI47_04595 at 966.219 kb on + strand, within IAI47_04595 at 966.220 kb on - strand, within IAI47_04595 at 966.220 kb on - strand, within IAI47_04595 at 966.220 kb on - strand, within IAI47_04595 at 966.220 kb on - strand, within IAI47_04595 at 966.229 kb on + strand, within IAI47_04595 at 966.229 kb on + strand, within IAI47_04595 at 966.229 kb on + strand, within IAI47_04595 at 966.230 kb on - strand, within IAI47_04595 at 966.230 kb on - strand, within IAI47_04595 at 966.230 kb on - strand at 966.230 kb on - strand, within IAI47_04595 at 966.273 kb on + strand, within IAI47_04595 at 966.273 kb on + strand, within IAI47_04595 at 966.274 kb on - strand, within IAI47_04595 at 966.274 kb on - strand, within IAI47_04595 at 966.274 kb on - strand, within IAI47_04595 at 966.337 kb on + strand, within IAI47_04595 at 966.337 kb on + strand, within IAI47_04595 at 966.338 kb on - strand, within IAI47_04595 at 966.338 kb on - strand, within IAI47_04595 at 966.353 kb on - strand, within IAI47_04595 at 966.408 kb on - strand, within IAI47_04595 at 966.408 kb on - strand, within IAI47_04595 at 966.537 kb on + strand, within IAI47_04595 at 966.537 kb on + strand, within IAI47_04595 at 966.538 kb on - strand, within IAI47_04595 at 966.538 kb on - strand, within IAI47_04595 at 966.597 kb on + strand, within IAI47_04595 at 966.598 kb on - strand, within IAI47_04595 at 966.667 kb on + strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.668 kb on - strand, within IAI47_04595 at 966.713 kb on + strand at 966.713 kb on + strand at 966.713 kb on + strand at 966.713 kb on + strand at 966.714 kb on - strand at 966.714 kb on - strand at 966.714 kb on - strand at 966.714 kb on - strand at 966.714 kb on - strand at 966.788 kb on + strand at 966.788 kb on + strand at 966.788 kb on + strand at 966.788 kb on + strand at 966.788 kb on + strand at 966.788 kb on + strand at 966.789 kb on - strand at 966.789 kb on - strand at 966.789 kb on - strand at 966.789 kb on - strand at 966.789 kb on - strand at 966.789 kb on - strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.792 kb on + strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.793 kb on - strand at 966.806 kb on + strand at 966.807 kb on - strand at 966.807 kb on - strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.809 kb on + strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.810 kb on - strand at 966.829 kb on - strand at 966.830 kb on - strand at 966.839 kb on + strand at 966.840 kb on - strand at 966.896 kb on + strand at 966.896 kb on + strand at 966.896 kb on + strand at 966.896 kb on + strand at 966.897 kb on - strand at 966.897 kb on - strand at 966.913 kb on + strand at 966.914 kb on - strand at 966.914 kb on - strand at 966.914 kb on - strand at 966.935 kb on + strand at 966.936 kb on - strand at 967.005 kb on + strand, within IAI47_04600 at 967.005 kb on + strand, within IAI47_04600 at 967.005 kb on + strand, within IAI47_04600 at 967.006 kb on - strand, within IAI47_04600 at 967.006 kb on - strand, within IAI47_04600 at 967.023 kb on - strand, within IAI47_04600 at 967.055 kb on + strand, within IAI47_04600 at 967.055 kb on + strand, within IAI47_04600 at 967.055 kb on + strand, within IAI47_04600 at 967.056 kb on - strand, within IAI47_04600 at 967.056 kb on - strand, within IAI47_04600 at 967.056 kb on - strand, within IAI47_04600 at 967.056 kb on - strand, within IAI47_04600 at 967.078 kb on - strand, within IAI47_04600 at 967.091 kb on + strand, within IAI47_04600 at 967.092 kb on - strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.124 kb on + strand, within IAI47_04600 at 967.125 kb on - strand, within IAI47_04600 at 967.125 kb on - strand, within IAI47_04600 at 967.125 kb on - strand, within IAI47_04600 at 967.125 kb on - strand, within IAI47_04600 at 967.129 kb on - strand, within IAI47_04600 at 967.172 kb on - strand, within IAI47_04600 at 967.236 kb on - strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.322 kb on + strand, within IAI47_04600 at 967.323 kb on - strand, within IAI47_04600 at 967.323 kb on - strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.328 kb on + strand, within IAI47_04600 at 967.329 kb on - strand, within IAI47_04600 at 967.416 kb on + strand, within IAI47_04600 at 967.417 kb on - strand, within IAI47_04600 at 967.417 kb on - strand, within IAI47_04600 at 967.424 kb on + strand, within IAI47_04600 at 967.424 kb on + strand, within IAI47_04600 at 967.425 kb on - strand, within IAI47_04600 at 967.436 kb on + strand, within IAI47_04600 at 967.436 kb on + strand, within IAI47_04600 at 967.437 kb on - strand, within IAI47_04600 at 967.502 kb on + strand, within IAI47_04600 at 967.502 kb on + strand, within IAI47_04600 at 967.502 kb on + strand, within IAI47_04600 at 967.503 kb on - strand, within IAI47_04600 at 967.503 kb on - strand, within IAI47_04600 at 967.503 kb on - strand, within IAI47_04600 at 967.503 kb on - strand, within IAI47_04600 at 967.505 kb on + strand, within IAI47_04600 at 967.505 kb on + strand, within IAI47_04600 at 967.506 kb on - strand, within IAI47_04600 at 967.506 kb on - strand, within IAI47_04600 at 967.642 kb on + strand, within IAI47_04600 at 967.643 kb on - strand, within IAI47_04600 at 967.659 kb on + strand, within IAI47_04600 at 967.659 kb on + strand, within IAI47_04600 at 967.711 kb on + strand, within IAI47_04600 at 967.711 kb on + strand, within IAI47_04600 at 967.735 kb on - strand, within IAI47_04600 at 967.735 kb on - strand, within IAI47_04600
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 964,882 + +1.3 964,883 - +2.1 964,934 + +2.1 965,093 + IAI47_04590 0.25 +0.8 965,154 - IAI47_04590 0.32 +2.0 965,154 - IAI47_04590 0.32 -0.5 965,165 + IAI47_04590 0.33 +1.7 965,166 - IAI47_04590 0.33 -0.9 965,166 - IAI47_04590 0.33 +0.8 965,166 - IAI47_04590 0.33 +2.2 965,166 - IAI47_04590 0.33 +0.5 965,180 + IAI47_04590 0.35 +0.2 965,180 + IAI47_04590 0.35 +1.2 965,180 + IAI47_04590 0.35 -0.3 965,210 - IAI47_04590 0.38 +0.5 965,469 + IAI47_04590 0.69 -1.6 965,470 - IAI47_04590 0.69 +0.7 965,707 - -0.3 965,765 + -1.4 965,765 + +1.4 965,785 + +1.5 965,786 - +1.5 965,866 + IAI47_04595 0.12 +1.6 965,866 + IAI47_04595 0.12 -0.3 965,867 - IAI47_04595 0.13 +1.8 965,867 - IAI47_04595 0.13 -1.4 965,867 - IAI47_04595 0.13 -2.5 965,867 - IAI47_04595 0.13 -0.6 965,867 - IAI47_04595 0.13 +0.1 965,867 - IAI47_04595 0.13 +0.5 965,867 - IAI47_04595 0.13 +0.4 965,867 - IAI47_04595 0.13 +0.6 965,868 + IAI47_04595 0.13 +1.9 965,868 + IAI47_04595 0.13 +0.5 965,868 + IAI47_04595 0.13 +2.5 965,868 + IAI47_04595 0.13 +0.9 965,868 + IAI47_04595 0.13 +0.5 965,868 + IAI47_04595 0.13 -0.2 965,868 + IAI47_04595 0.13 -2.5 965,868 + IAI47_04595 0.13 +0.7 965,868 + IAI47_04595 0.13 +0.5 965,868 + IAI47_04595 0.13 -0.3 965,869 - IAI47_04595 0.13 +0.3 965,869 - IAI47_04595 0.13 +0.9 965,869 - IAI47_04595 0.13 -2.9 965,934 + IAI47_04595 0.19 +1.3 965,981 + IAI47_04595 0.23 +2.7 965,981 + IAI47_04595 0.23 -0.3 965,981 + IAI47_04595 0.23 -0.5 965,981 + IAI47_04595 0.23 +0.1 965,981 + IAI47_04595 0.23 +3.1 965,981 + IAI47_04595 0.23 -2.2 965,981 + IAI47_04595 0.23 +0.3 965,981 + IAI47_04595 0.23 -0.9 965,981 + IAI47_04595 0.23 +1.4 965,981 + IAI47_04595 0.23 +0.2 965,981 + IAI47_04595 0.23 +0.3 965,981 + IAI47_04595 0.23 +0.9 965,982 - IAI47_04595 0.23 -3.0 965,982 - IAI47_04595 0.23 +0.1 965,982 - IAI47_04595 0.23 -0.8 965,982 - IAI47_04595 0.23 +0.5 965,982 - IAI47_04595 0.23 -1.8 965,982 - IAI47_04595 0.23 -1.0 965,982 - IAI47_04595 0.23 +0.7 965,983 + IAI47_04595 0.24 +1.5 965,983 + IAI47_04595 0.24 -2.0 965,983 + IAI47_04595 0.24 +0.9 965,983 + IAI47_04595 0.24 +2.4 965,983 + IAI47_04595 0.24 -1.6 965,984 - IAI47_04595 0.24 -2.4 965,984 - IAI47_04595 0.24 -2.3 965,984 - IAI47_04595 0.24 +2.1 965,984 - IAI47_04595 0.24 -1.6 965,984 - IAI47_04595 0.24 +1.5 965,984 - IAI47_04595 0.24 +0.2 966,039 + IAI47_04595 0.29 -2.9 966,039 + IAI47_04595 0.29 +1.0 966,039 + IAI47_04595 0.29 +2.2 966,039 + IAI47_04595 0.29 +0.5 966,039 + IAI47_04595 0.29 +0.4 966,039 + IAI47_04595 0.29 -0.7 966,039 + IAI47_04595 0.29 -1.8 966,040 - IAI47_04595 0.29 -1.3 966,040 - IAI47_04595 0.29 -0.1 966,040 - IAI47_04595 0.29 -1.5 966,040 - IAI47_04595 0.29 +1.2 966,040 - IAI47_04595 0.29 -0.8 966,040 - IAI47_04595 0.29 +1.1 966,040 - IAI47_04595 0.29 +1.7 966,040 - IAI47_04595 0.29 +0.5 966,040 - IAI47_04595 0.29 -1.0 966,040 - IAI47_04595 0.29 -0.4 966,047 - IAI47_04595 0.30 +0.6 966,047 - IAI47_04595 0.30 -1.8 966,047 - IAI47_04595 0.30 +0.8 966,047 - IAI47_04595 0.30 -1.5 966,217 + IAI47_04595 0.46 -0.9 966,217 + IAI47_04595 0.46 -0.2 966,219 + IAI47_04595 0.46 -0.5 966,219 + IAI47_04595 0.46 -0.1 966,219 + IAI47_04595 0.46 +1.9 966,219 + IAI47_04595 0.46 +0.7 966,220 - IAI47_04595 0.46 +0.5 966,220 - IAI47_04595 0.46 +1.2 966,220 - IAI47_04595 0.46 +1.3 966,220 - IAI47_04595 0.46 +0.7 966,229 + IAI47_04595 0.47 +2.2 966,229 + IAI47_04595 0.47 +2.0 966,229 + IAI47_04595 0.47 +0.4 966,230 - IAI47_04595 0.47 -0.1 966,230 - IAI47_04595 0.47 +1.5 966,230 - +1.5 966,230 - IAI47_04595 0.47 -1.3 966,273 + IAI47_04595 0.51 +1.2 966,273 + IAI47_04595 0.51 +0.2 966,274 - IAI47_04595 0.51 -1.0 966,274 - IAI47_04595 0.51 +0.2 966,274 - IAI47_04595 0.51 -1.3 966,337 + IAI47_04595 0.57 +1.2 966,337 + IAI47_04595 0.57 +1.7 966,338 - IAI47_04595 0.57 -0.1 966,338 - IAI47_04595 0.57 +0.9 966,353 - IAI47_04595 0.59 -0.5 966,408 - IAI47_04595 0.64 +1.7 966,408 - IAI47_04595 0.64 +0.5 966,537 + IAI47_04595 0.76 -1.0 966,537 + IAI47_04595 0.76 +2.8 966,538 - IAI47_04595 0.76 +2.5 966,538 - IAI47_04595 0.76 -0.3 966,597 + IAI47_04595 0.82 -3.0 966,598 - IAI47_04595 0.82 -0.5 966,667 + IAI47_04595 0.89 +0.7 966,668 - IAI47_04595 0.89 -0.4 966,668 - IAI47_04595 0.89 +0.5 966,668 - IAI47_04595 0.89 -2.2 966,668 - IAI47_04595 0.89 -0.6 966,668 - IAI47_04595 0.89 +2.4 966,668 - IAI47_04595 0.89 -0.0 966,668 - IAI47_04595 0.89 -2.2 966,713 + -2.5 966,713 + +0.2 966,713 + +1.5 966,713 + +1.5 966,714 - -0.4 966,714 - -1.5 966,714 - -2.2 966,714 - +1.6 966,714 - +0.2 966,788 + +1.2 966,788 + +1.1 966,788 + +0.1 966,788 + +1.2 966,788 + +0.2 966,788 + -3.9 966,789 - +0.9 966,789 - -0.3 966,789 - +1.8 966,789 - -2.0 966,789 - +0.8 966,789 - +1.5 966,792 + -0.8 966,792 + +1.2 966,792 + -0.7 966,792 + -0.5 966,792 + -0.1 966,792 + +0.3 966,792 + +0.0 966,792 + -0.2 966,792 + -0.2 966,793 - -1.8 966,793 - +0.3 966,793 - +1.4 966,793 - +0.5 966,793 - -1.4 966,793 - -0.7 966,793 - +0.3 966,793 - +0.7 966,793 - +0.8 966,793 - -2.2 966,806 + +1.1 966,807 - +0.7 966,807 - -0.2 966,809 + -1.8 966,809 + -1.3 966,809 + -0.0 966,809 + +1.7 966,809 + -0.1 966,809 + -1.4 966,809 + +0.2 966,809 + +0.2 966,809 + +0.7 966,809 + -1.5 966,810 - +0.7 966,810 - -0.9 966,810 - -2.2 966,810 - -1.3 966,810 - +0.1 966,810 - +0.9 966,810 - -1.9 966,810 - -2.6 966,829 - +1.0 966,830 - +1.0 966,839 + +3.5 966,840 - 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IAI47_04600 0.46 +0.5 967,503 - IAI47_04600 0.46 -1.9 967,503 - IAI47_04600 0.46 +1.8 967,503 - IAI47_04600 0.46 +0.1 967,505 + IAI47_04600 0.46 -1.5 967,505 + IAI47_04600 0.46 +1.9 967,506 - IAI47_04600 0.46 -1.6 967,506 - IAI47_04600 0.46 -1.3 967,642 + IAI47_04600 0.54 +1.5 967,643 - IAI47_04600 0.55 +0.9 967,659 + IAI47_04600 0.56 +0.0 967,659 + IAI47_04600 0.56 +0.8 967,711 + IAI47_04600 0.59 -0.5 967,711 + IAI47_04600 0.59 +0.3 967,735 - IAI47_04600 0.60 +1.9 967,735 - IAI47_04600 0.60 -0.1
Or see this region's nucleotide sequence