Strain Fitness in Dechlorosoma suillum PS around Dsui_3526

Experiment: ALP with Cisplatin 0.0009 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3524 and Dsui_3525 are separated by 1 nucleotidesDsui_3525 and Dsui_3526 are separated by 12 nucleotidesDsui_3526 and Dsui_3527 are separated by 138 nucleotides Dsui_3524: Dsui_3524 - signal transduction histidine kinase, at 3,790,612 to 3,792,000 _3524 Dsui_3525: Dsui_3525 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,792,002 to 3,792,766 _3525 Dsui_3526: Dsui_3526 - phosphatidylserine decarboxylase, at 3,792,779 to 3,793,423 _3526 Dsui_3527: Dsui_3527 - ketol-acid reductoisomerase, at 3,793,562 to 3,794,578 _3527 Position (kb) 3792 3793 3794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3791.878 kb on - strandat 3791.884 kb on - strandat 3791.892 kb on + strandat 3793.517 kb on - strandat 3794.245 kb on - strand, within Dsui_3527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
remove
3,791,878 - -2.7
3,791,884 - -3.9
3,791,892 + -4.3
3,793,517 - -0.8
3,794,245 - Dsui_3527 0.67 -2.5

Or see this region's nucleotide sequence