Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3507 and Dsui_3508 are separated by 146 nucleotides Dsui_3508 and Dsui_3509 are separated by 47 nucleotides Dsui_3509 and Dsui_3510 are separated by 40 nucleotides
Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039
_3507
Dsui_3508: Dsui_3508 - exodeoxyribonuclease VII, small subunit, at 3,773,186 to 3,773,452
_3508
Dsui_3509: Dsui_3509 - geranylgeranyl pyrophosphate synthase, at 3,773,500 to 3,774,408
_3509
Dsui_3510: Dsui_3510 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,774,449 to 3,776,305
_3510
Position (kb)
3773
3774 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3772.232 kb on - strand, within Dsui_3507 at 3772.333 kb on - strand, within Dsui_3507 at 3772.346 kb on - strand, within Dsui_3507 at 3772.361 kb on + strand at 3772.367 kb on + strand at 3772.393 kb on + strand, within Dsui_3507 at 3772.429 kb on - strand, within Dsui_3507 at 3772.477 kb on + strand at 3772.486 kb on - strand, within Dsui_3507 at 3772.592 kb on + strand, within Dsui_3507 at 3772.605 kb on - strand, within Dsui_3507 at 3772.618 kb on + strand, within Dsui_3507 at 3772.669 kb on - strand, within Dsui_3507 at 3772.696 kb on + strand, within Dsui_3507 at 3772.754 kb on + strand, within Dsui_3507 at 3772.765 kb on + strand at 3772.767 kb on + strand at 3772.870 kb on + strand, within Dsui_3507 at 3772.878 kb on + strand, within Dsui_3507 at 3772.928 kb on + strand, within Dsui_3507 at 3772.938 kb on + strand at 3772.947 kb on - strand at 3772.997 kb on - strand at 3773.008 kb on - strand at 3773.020 kb on - strand at 3773.040 kb on + strand at 3773.040 kb on + strand at 3773.048 kb on - strand at 3773.048 kb on - strand at 3773.048 kb on - strand at 3773.123 kb on - strand at 3773.192 kb on + strand at 3773.225 kb on + strand, within Dsui_3508 at 3773.346 kb on + strand, within Dsui_3508 at 3773.364 kb on - strand at 3773.429 kb on + strand at 3773.447 kb on + strand at 3773.447 kb on + strand at 3773.465 kb on + strand at 3774.379 kb on + strand at 3774.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,772,232 - Dsui_3507 0.27 -0.8 3,772,333 - Dsui_3507 0.36 -1.1 3,772,346 - Dsui_3507 0.37 -0.7 3,772,361 + +0.5 3,772,367 + +0.5 3,772,393 + Dsui_3507 0.42 -2.5 3,772,429 - Dsui_3507 0.45 -0.8 3,772,477 + +0.5 3,772,486 - Dsui_3507 0.50 -0.1 3,772,592 + Dsui_3507 0.60 -1.5 3,772,605 - Dsui_3507 0.61 -0.5 3,772,618 + Dsui_3507 0.62 +0.5 3,772,669 - Dsui_3507 0.67 +0.0 3,772,696 + Dsui_3507 0.69 -0.5 3,772,754 + Dsui_3507 0.74 -1.5 3,772,765 + +0.5 3,772,767 + -0.5 3,772,870 + Dsui_3507 0.85 +0.5 3,772,878 + Dsui_3507 0.85 -2.3 3,772,928 + Dsui_3507 0.90 +0.5 3,772,938 + -1.1 3,772,947 - -0.8 3,772,997 - -1.0 3,773,008 - -0.1 3,773,020 - -0.4 3,773,040 + -1.1 3,773,040 + -1.5 3,773,048 - -0.6 3,773,048 - +0.3 3,773,048 - -0.5 3,773,123 - -0.5 3,773,192 + -1.5 3,773,225 + Dsui_3508 0.15 -1.2 3,773,346 + Dsui_3508 0.60 -1.3 3,773,364 - -0.5 3,773,429 + -1.1 3,773,447 + -0.4 3,773,447 + +0.2 3,773,465 + -0.2 3,774,379 + -3.8 3,774,384 + -0.4
Or see this region's nucleotide sequence