Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3504 and Dsui_3505 overlap by 1 nucleotides Dsui_3505 and Dsui_3506 are separated by 93 nucleotides Dsui_3506 and Dsui_3507 are separated by 110 nucleotides
Dsui_3504: Dsui_3504 - rhodanese-related sulfurtransferase, at 3,769,664 to 3,770,512
_3504
Dsui_3505: Dsui_3505 - Protein of unknown function (DUF3478), at 3,770,512 to 3,770,868
_3505
Dsui_3506: Dsui_3506 - putative permease, DMT superfamily, at 3,770,962 to 3,771,819
_3506
Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039
_3507
Position (kb)
3770
3771
3772 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3770.225 kb on + strand, within Dsui_3504 at 3770.376 kb on + strand at 3770.411 kb on + strand, within Dsui_3504 at 3770.478 kb on - strand at 3770.616 kb on - strand, within Dsui_3505 at 3770.627 kb on - strand, within Dsui_3505 at 3770.669 kb on + strand, within Dsui_3505 at 3770.709 kb on - strand, within Dsui_3505 at 3770.720 kb on + strand at 3770.784 kb on + strand, within Dsui_3505 at 3770.793 kb on + strand, within Dsui_3505 at 3770.801 kb on - strand, within Dsui_3505 at 3770.801 kb on - strand, within Dsui_3505 at 3770.839 kb on - strand at 3770.845 kb on + strand at 3770.871 kb on - strand at 3770.872 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.877 kb on - strand at 3770.928 kb on + strand at 3770.936 kb on - strand at 3770.960 kb on + strand at 3770.960 kb on + strand at 3770.991 kb on - strand at 3771.147 kb on - strand, within Dsui_3506 at 3771.180 kb on - strand, within Dsui_3506 at 3771.207 kb on + strand, within Dsui_3506 at 3771.297 kb on - strand, within Dsui_3506 at 3771.297 kb on - strand, within Dsui_3506 at 3771.319 kb on + strand, within Dsui_3506 at 3771.324 kb on + strand at 3771.347 kb on - strand, within Dsui_3506 at 3771.441 kb on + strand at 3771.493 kb on + strand, within Dsui_3506 at 3771.523 kb on - strand, within Dsui_3506 at 3771.617 kb on + strand at 3771.652 kb on - strand, within Dsui_3506 at 3771.654 kb on + strand at 3771.662 kb on + strand at 3771.666 kb on + strand at 3771.673 kb on - strand, within Dsui_3506 at 3771.690 kb on + strand, within Dsui_3506 at 3771.729 kb on + strand at 3771.776 kb on - strand at 3771.950 kb on - strand at 3771.977 kb on + strand at 3772.038 kb on - strand at 3772.058 kb on - strand, within Dsui_3507 at 3772.135 kb on - strand, within Dsui_3507 at 3772.146 kb on - strand, within Dsui_3507 at 3772.156 kb on + strand, within Dsui_3507 at 3772.161 kb on + strand, within Dsui_3507 at 3772.232 kb on - strand, within Dsui_3507 at 3772.333 kb on - strand, within Dsui_3507 at 3772.346 kb on - strand, within Dsui_3507 at 3772.361 kb on + strand at 3772.367 kb on + strand at 3772.393 kb on + strand, within Dsui_3507 at 3772.429 kb on - strand, within Dsui_3507 at 3772.477 kb on + strand at 3772.486 kb on - strand, within Dsui_3507 at 3772.592 kb on + strand, within Dsui_3507 at 3772.605 kb on - strand, within Dsui_3507 at 3772.618 kb on + strand, within Dsui_3507 at 3772.669 kb on - strand, within Dsui_3507 at 3772.696 kb on + strand, within Dsui_3507 at 3772.754 kb on + strand, within Dsui_3507 at 3772.765 kb on + strand at 3772.767 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,770,225 + Dsui_3504 0.66 -1.1 3,770,376 + -0.5 3,770,411 + Dsui_3504 0.88 -0.5 3,770,478 - -0.7 3,770,616 - Dsui_3505 0.29 -0.5 3,770,627 - Dsui_3505 0.32 -0.9 3,770,669 + Dsui_3505 0.44 -1.1 3,770,709 - Dsui_3505 0.55 -0.8 3,770,720 + +0.5 3,770,784 + Dsui_3505 0.76 -0.5 3,770,793 + Dsui_3505 0.79 -1.5 3,770,801 - Dsui_3505 0.81 -0.7 3,770,801 - Dsui_3505 0.81 -0.6 3,770,839 - -0.2 3,770,845 + -0.5 3,770,871 - +1.8 3,770,872 - +0.7 3,770,877 - +0.7 3,770,877 - -0.3 3,770,877 - -1.0 3,770,877 - -0.2 3,770,877 - -0.6 3,770,928 + -1.5 3,770,936 - +0.1 3,770,960 + +0.5 3,770,960 + +0.5 3,770,991 - -0.4 3,771,147 - Dsui_3506 0.22 +0.6 3,771,180 - Dsui_3506 0.25 +0.1 3,771,207 + Dsui_3506 0.29 -2.1 3,771,297 - Dsui_3506 0.39 -0.6 3,771,297 - Dsui_3506 0.39 +1.3 3,771,319 + Dsui_3506 0.42 -0.5 3,771,324 + -0.5 3,771,347 - Dsui_3506 0.45 +0.1 3,771,441 + +0.5 3,771,493 + Dsui_3506 0.62 -1.1 3,771,523 - Dsui_3506 0.65 -0.4 3,771,617 + -0.5 3,771,652 - Dsui_3506 0.80 -0.2 3,771,654 + +0.5 3,771,662 + +0.5 3,771,666 + +0.5 3,771,673 - Dsui_3506 0.83 -0.6 3,771,690 + Dsui_3506 0.85 -1.8 3,771,729 + -0.5 3,771,776 - +0.4 3,771,950 - -0.4 3,771,977 + +0.5 3,772,038 - -0.5 3,772,058 - Dsui_3507 0.12 -0.7 3,772,135 - Dsui_3507 0.18 -0.9 3,772,146 - Dsui_3507 0.19 +0.5 3,772,156 + Dsui_3507 0.20 +0.5 3,772,161 + Dsui_3507 0.21 -0.5 3,772,232 - Dsui_3507 0.27 -0.8 3,772,333 - Dsui_3507 0.36 -1.1 3,772,346 - Dsui_3507 0.37 -0.7 3,772,361 + +0.5 3,772,367 + +0.5 3,772,393 + Dsui_3507 0.42 -2.5 3,772,429 - Dsui_3507 0.45 -0.8 3,772,477 + +0.5 3,772,486 - Dsui_3507 0.50 -0.1 3,772,592 + Dsui_3507 0.60 -1.5 3,772,605 - Dsui_3507 0.61 -0.5 3,772,618 + Dsui_3507 0.62 +0.5 3,772,669 - Dsui_3507 0.67 +0.0 3,772,696 + Dsui_3507 0.69 -0.5 3,772,754 + Dsui_3507 0.74 -1.5 3,772,765 + +0.5 3,772,767 + -0.5
Or see this region's nucleotide sequence