Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3392 and Dsui_3393 overlap by 8 nucleotides Dsui_3393 and Dsui_3394 are separated by 186 nucleotides
Dsui_3392: Dsui_3392 - carboxylate-amine ligase, YbdK family, at 3,636,037 to 3,637,161
_3392
Dsui_3393: Dsui_3393 - Kef-type K+ transport system, membrane component, at 3,637,154 to 3,638,398
_3393
Dsui_3394: Dsui_3394 - P-type ATPase, translocating, at 3,638,585 to 3,641,332
_3394
Position (kb)
3637
3638
3639 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3636.219 kb on - strand, within Dsui_3392 at 3636.327 kb on + strand at 3636.335 kb on - strand, within Dsui_3392 at 3636.336 kb on - strand, within Dsui_3392 at 3636.351 kb on - strand, within Dsui_3392 at 3636.393 kb on - strand, within Dsui_3392 at 3636.429 kb on + strand, within Dsui_3392 at 3636.464 kb on - strand, within Dsui_3392 at 3636.529 kb on + strand at 3636.668 kb on + strand, within Dsui_3392 at 3636.776 kb on + strand at 3636.819 kb on - strand, within Dsui_3392 at 3636.919 kb on - strand, within Dsui_3392 at 3636.966 kb on - strand, within Dsui_3392 at 3637.042 kb on + strand at 3637.122 kb on + strand at 3637.136 kb on - strand at 3637.194 kb on + strand at 3637.280 kb on + strand at 3637.304 kb on + strand at 3637.312 kb on - strand, within Dsui_3393 at 3637.384 kb on - strand, within Dsui_3393 at 3637.526 kb on - strand, within Dsui_3393 at 3637.534 kb on - strand, within Dsui_3393 at 3637.635 kb on - strand, within Dsui_3393 at 3638.032 kb on - strand, within Dsui_3393 at 3638.148 kb on - strand, within Dsui_3393 at 3638.248 kb on + strand, within Dsui_3393 at 3638.298 kb on + strand at 3638.421 kb on + strand at 3638.481 kb on + strand at 3638.481 kb on + strand at 3638.494 kb on - strand at 3638.559 kb on - strand at 3638.573 kb on + strand at 3638.591 kb on - strand at 3638.673 kb on + strand at 3638.763 kb on + strand at 3638.763 kb on - strand at 3638.785 kb on + strand at 3638.793 kb on - strand at 3638.848 kb on + strand at 3638.872 kb on - strand at 3638.921 kb on - strand, within Dsui_3394 at 3638.925 kb on + strand at 3638.939 kb on - strand, within Dsui_3394 at 3639.009 kb on - strand, within Dsui_3394 at 3639.114 kb on + strand, within Dsui_3394 at 3639.186 kb on + strand, within Dsui_3394 at 3639.220 kb on + strand, within Dsui_3394 at 3639.220 kb on + strand at 3639.258 kb on + strand, within Dsui_3394 at 3639.264 kb on + strand, within Dsui_3394 at 3639.266 kb on - strand, within Dsui_3394 at 3639.337 kb on + strand at 3639.348 kb on + strand at 3639.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,636,219 - Dsui_3392 0.16 -2.7 3,636,327 + -0.5 3,636,335 - Dsui_3392 0.26 -2.6 3,636,336 - Dsui_3392 0.27 -2.2 3,636,351 - Dsui_3392 0.28 -1.9 3,636,393 - Dsui_3392 0.32 -2.5 3,636,429 + Dsui_3392 0.35 +0.5 3,636,464 - Dsui_3392 0.38 -2.8 3,636,529 + +0.5 3,636,668 + Dsui_3392 0.56 -1.1 3,636,776 + +0.5 3,636,819 - Dsui_3392 0.70 -2.2 3,636,919 - Dsui_3392 0.78 -2.5 3,636,966 - Dsui_3392 0.83 -3.3 3,637,042 + -0.5 3,637,122 + -0.5 3,637,136 - -3.3 3,637,194 + +0.5 3,637,280 + +0.5 3,637,304 + +0.5 3,637,312 - Dsui_3393 0.13 -2.9 3,637,384 - Dsui_3393 0.18 -2.4 3,637,526 - Dsui_3393 0.30 -2.5 3,637,534 - Dsui_3393 0.31 -1.6 3,637,635 - Dsui_3393 0.39 -2.4 3,638,032 - Dsui_3393 0.71 -3.1 3,638,148 - Dsui_3393 0.80 -1.8 3,638,248 + Dsui_3393 0.88 -1.8 3,638,298 + +0.5 3,638,421 + -0.5 3,638,481 + +0.5 3,638,481 + +0.5 3,638,494 - -1.2 3,638,559 - -0.3 3,638,573 + -0.5 3,638,591 - -1.1 3,638,673 + +0.5 3,638,763 + -1.8 3,638,763 - -0.1 3,638,785 + +0.5 3,638,793 - -2.3 3,638,848 + -2.3 3,638,872 - -0.5 3,638,921 - Dsui_3394 0.12 -1.7 3,638,925 + +0.5 3,638,939 - Dsui_3394 0.13 +0.8 3,639,009 - Dsui_3394 0.15 +0.5 3,639,114 + Dsui_3394 0.19 +0.5 3,639,186 + Dsui_3394 0.22 -0.5 3,639,220 + Dsui_3394 0.23 -1.5 3,639,220 + +0.5 3,639,258 + Dsui_3394 0.24 +0.5 3,639,264 + Dsui_3394 0.25 +0.5 3,639,266 - Dsui_3394 0.25 -1.0 3,639,337 + +0.5 3,639,348 + +0.5 3,639,380 + +0.5
Or see this region's nucleotide sequence