Strain Fitness in Dechlorosoma suillum PS around Dsui_3337

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3336 and Dsui_3337 overlap by 4 nucleotidesDsui_3337 and Dsui_3338 overlap by 4 nucleotidesDsui_3338 and Dsui_3339 are separated by 147 nucleotides Dsui_3336: Dsui_3336 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 3,576,788 to 3,577,912 _3336 Dsui_3337: Dsui_3337 - hypothetical protein, at 3,577,909 to 3,578,505 _3337 Dsui_3338: Dsui_3338 - Zn-finger containing NTP pyrophosphohydrolase, at 3,578,502 to 3,578,954 _3338 Dsui_3339: Dsui_3339 - branched-chain amino acid aminotransferase, group I, at 3,579,102 to 3,580,022 _3339 Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -1 0 1at 3577.982 kb on - strand, within Dsui_3337at 3577.995 kb on + strand, within Dsui_3337at 3578.063 kb on + strand, within Dsui_3337at 3578.128 kb on + strand, within Dsui_3337at 3578.144 kb on - strand, within Dsui_3337at 3578.144 kb on - strand, within Dsui_3337at 3578.210 kb on - strand, within Dsui_3337at 3578.220 kb on - strand, within Dsui_3337at 3578.310 kb on - strand, within Dsui_3337at 3578.404 kb on + strand, within Dsui_3337at 3578.404 kb on + strand, within Dsui_3337at 3578.412 kb on - strand, within Dsui_3337at 3578.412 kb on - strand, within Dsui_3337at 3578.530 kb on - strandat 3578.531 kb on - strandat 3578.531 kb on - strandat 3578.563 kb on - strand, within Dsui_3338at 3578.612 kb on + strand, within Dsui_3338at 3578.652 kb on - strand, within Dsui_3338at 3578.753 kb on + strand, within Dsui_3338at 3578.787 kb on - strand, within Dsui_3338at 3578.803 kb on - strand, within Dsui_3338at 3578.805 kb on + strandat 3578.813 kb on - strand, within Dsui_3338at 3578.818 kb on - strand, within Dsui_3338at 3578.837 kb on - strand, within Dsui_3338at 3579.004 kb on - strandat 3579.108 kb on + strandat 3579.165 kb on + strandat 3579.202 kb on - strand, within Dsui_3339at 3579.277 kb on - strand, within Dsui_3339at 3579.356 kb on - strand, within Dsui_3339at 3579.357 kb on + strand, within Dsui_3339at 3579.484 kb on - strand, within Dsui_3339

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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3,577,982 - Dsui_3337 0.12 -0.5
3,577,995 + Dsui_3337 0.14 -0.5
3,578,063 + Dsui_3337 0.26 -0.5
3,578,128 + Dsui_3337 0.37 +0.5
3,578,144 - Dsui_3337 0.39 -0.7
3,578,144 - Dsui_3337 0.39 -0.8
3,578,210 - Dsui_3337 0.50 -0.5
3,578,220 - Dsui_3337 0.52 -1.7
3,578,310 - Dsui_3337 0.67 -0.5
3,578,404 + Dsui_3337 0.83 -0.5
3,578,404 + Dsui_3337 0.83 +0.5
3,578,412 - Dsui_3337 0.84 -1.2
3,578,412 - Dsui_3337 0.84 -0.6
3,578,530 - -0.6
3,578,531 - +0.2
3,578,531 - +0.1
3,578,563 - Dsui_3338 0.13 -0.7
3,578,612 + Dsui_3338 0.24 -0.5
3,578,652 - Dsui_3338 0.33 -0.6
3,578,753 + Dsui_3338 0.55 -0.5
3,578,787 - Dsui_3338 0.63 -0.7
3,578,803 - Dsui_3338 0.66 -0.7
3,578,805 + +0.5
3,578,813 - Dsui_3338 0.69 -1.0
3,578,818 - Dsui_3338 0.70 -0.5
3,578,837 - Dsui_3338 0.74 -1.5
3,579,004 - +0.5
3,579,108 + -0.1
3,579,165 + -0.1
3,579,202 - Dsui_3339 0.11 +0.5
3,579,277 - Dsui_3339 0.19 +0.5
3,579,356 - Dsui_3339 0.28 +0.5
3,579,357 + Dsui_3339 0.28 -0.2
3,579,484 - Dsui_3339 0.41 +0.5

Or see this region's nucleotide sequence