Strain Fitness in Dechlorosoma suillum PS around Dsui_3166

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3165 and Dsui_3166 overlap by 32 nucleotidesDsui_3166 and Dsui_3167 are separated by 93 nucleotides Dsui_3165: Dsui_3165 - tRNA(Ile)-lysidine synthetase, at 3,392,770 to 3,394,215 _3165 Dsui_3166: Dsui_3166 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 3,394,184 to 3,395,152 _3166 Dsui_3167: Dsui_3167 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,395,246 to 3,397,426 _3167 Position (kb) 3394 3395 3396Strain fitness (log2 ratio) -2 -1 0 1at 3395.251 kb on - strandat 3395.400 kb on - strandat 3395.517 kb on - strand, within Dsui_3167at 3395.517 kb on - strand, within Dsui_3167at 3395.606 kb on - strand, within Dsui_3167at 3395.647 kb on + strand, within Dsui_3167at 3395.657 kb on + strand, within Dsui_3167at 3395.660 kb on - strand, within Dsui_3167at 3395.660 kb on - strand, within Dsui_3167at 3395.665 kb on - strand, within Dsui_3167at 3395.925 kb on - strand, within Dsui_3167at 3395.975 kb on - strand, within Dsui_3167at 3396.067 kb on + strandat 3396.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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3,395,251 - +0.5
3,395,400 - +0.4
3,395,517 - Dsui_3167 0.12 -2.5
3,395,517 - Dsui_3167 0.12 -2.5
3,395,606 - Dsui_3167 0.17 -0.6
3,395,647 + Dsui_3167 0.18 -1.1
3,395,657 + Dsui_3167 0.19 -2.3
3,395,660 - Dsui_3167 0.19 +0.5
3,395,660 - Dsui_3167 0.19 -2.5
3,395,665 - Dsui_3167 0.19 +1.2
3,395,925 - Dsui_3167 0.31 -1.8
3,395,975 - Dsui_3167 0.33 -0.5
3,396,067 + +0.5
3,396,137 + +0.5

Or see this region's nucleotide sequence