Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3161 and Dsui_3162 are separated by 311 nucleotides Dsui_3162 and Dsui_3163 overlap by 1 nucleotides
Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986
_3161
Dsui_3162: Dsui_3162 - TonB-dependent siderophore receptor, at 3,388,298 to 3,390,421
_3162
Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566
_3163
Position (kb)
3388
3389
3390
3391 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3387.302 kb on + strand, within Dsui_3161 at 3387.605 kb on + strand, within Dsui_3161 at 3387.673 kb on + strand, within Dsui_3161 at 3387.719 kb on + strand, within Dsui_3161 at 3387.918 kb on + strand at 3387.988 kb on - strand at 3388.269 kb on + strand at 3388.316 kb on - strand at 3388.345 kb on + strand at 3388.358 kb on - strand at 3388.382 kb on + strand at 3388.390 kb on - strand at 3388.402 kb on - strand at 3388.432 kb on - strand at 3388.432 kb on - strand at 3388.433 kb on - strand at 3388.553 kb on + strand, within Dsui_3162 at 3388.627 kb on - strand at 3388.700 kb on + strand, within Dsui_3162 at 3388.700 kb on + strand, within Dsui_3162 at 3388.751 kb on - strand, within Dsui_3162 at 3388.808 kb on + strand, within Dsui_3162 at 3388.813 kb on + strand, within Dsui_3162 at 3388.922 kb on - strand, within Dsui_3162 at 3388.955 kb on + strand, within Dsui_3162 at 3388.963 kb on - strand, within Dsui_3162 at 3388.989 kb on + strand, within Dsui_3162 at 3389.031 kb on + strand, within Dsui_3162 at 3389.126 kb on - strand, within Dsui_3162 at 3389.263 kb on - strand at 3389.329 kb on + strand, within Dsui_3162 at 3389.341 kb on + strand, within Dsui_3162 at 3389.490 kb on + strand, within Dsui_3162 at 3389.503 kb on - strand, within Dsui_3162 at 3389.533 kb on - strand, within Dsui_3162 at 3389.633 kb on + strand, within Dsui_3162 at 3389.681 kb on + strand, within Dsui_3162 at 3389.745 kb on + strand, within Dsui_3162 at 3389.763 kb on - strand, within Dsui_3162 at 3389.765 kb on + strand, within Dsui_3162 at 3389.785 kb on - strand, within Dsui_3162 at 3389.895 kb on + strand, within Dsui_3162 at 3389.934 kb on + strand at 3390.037 kb on - strand, within Dsui_3162 at 3390.252 kb on - strand at 3390.273 kb on - strand at 3390.286 kb on + strand at 3390.301 kb on - strand at 3390.495 kb on - strand at 3390.570 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3391.015 kb on - strand, within Dsui_3163 at 3391.021 kb on - strand, within Dsui_3163 at 3391.049 kb on + strand, within Dsui_3163 at 3391.062 kb on + strand, within Dsui_3163 at 3391.072 kb on + strand at 3391.188 kb on - strand, within Dsui_3163 at 3391.221 kb on - strand, within Dsui_3163 at 3391.278 kb on - strand, within Dsui_3163 at 3391.333 kb on + strand, within Dsui_3163 at 3391.371 kb on + strand, within Dsui_3163 at 3391.389 kb on + strand, within Dsui_3163 at 3391.421 kb on - strand, within Dsui_3163
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,387,302 + Dsui_3161 0.64 +0.5 3,387,605 + Dsui_3161 0.80 +0.5 3,387,673 + Dsui_3161 0.84 -1.5 3,387,719 + Dsui_3161 0.86 -0.5 3,387,918 + -2.2 3,387,988 - -2.1 3,388,269 + +0.5 3,388,316 - +0.5 3,388,345 + -0.8 3,388,358 - -1.1 3,388,382 + +0.5 3,388,390 - -0.5 3,388,402 - +0.5 3,388,432 - -0.5 3,388,432 - +0.5 3,388,433 - -1.1 3,388,553 + Dsui_3162 0.12 -0.2 3,388,627 - +0.5 3,388,700 + Dsui_3162 0.19 -0.5 3,388,700 + Dsui_3162 0.19 -0.8 3,388,751 - Dsui_3162 0.21 -0.5 3,388,808 + Dsui_3162 0.24 -3.0 3,388,813 + Dsui_3162 0.24 +2.1 3,388,922 - Dsui_3162 0.29 +0.5 3,388,955 + Dsui_3162 0.31 -0.3 3,388,963 - Dsui_3162 0.31 +0.5 3,388,989 + Dsui_3162 0.33 +0.9 3,389,031 + Dsui_3162 0.35 -0.3 3,389,126 - Dsui_3162 0.39 -0.5 3,389,263 - -0.5 3,389,329 + Dsui_3162 0.49 -1.2 3,389,341 + Dsui_3162 0.49 +0.3 3,389,490 + Dsui_3162 0.56 +0.7 3,389,503 - Dsui_3162 0.57 +0.5 3,389,533 - Dsui_3162 0.58 +0.5 3,389,633 + Dsui_3162 0.63 -1.5 3,389,681 + Dsui_3162 0.65 -0.1 3,389,745 + Dsui_3162 0.68 -0.5 3,389,763 - Dsui_3162 0.69 +0.5 3,389,765 + Dsui_3162 0.69 -2.3 3,389,785 - Dsui_3162 0.70 -0.5 3,389,895 + Dsui_3162 0.75 -0.8 3,389,934 + +0.5 3,390,037 - Dsui_3162 0.82 -0.5 3,390,252 - +0.5 3,390,273 - -1.1 3,390,286 + -0.9 3,390,301 - -0.5 3,390,495 - -3.3 3,390,570 + Dsui_3163 0.13 +1.5 3,390,893 + Dsui_3163 0.41 -1.7 3,390,893 + Dsui_3163 0.41 -2.8 3,391,015 - Dsui_3163 0.52 -2.6 3,391,021 - Dsui_3163 0.52 -1.5 3,391,049 + Dsui_3163 0.55 -0.5 3,391,062 + Dsui_3163 0.56 -1.4 3,391,072 + +0.5 3,391,188 - Dsui_3163 0.67 -1.8 3,391,221 - Dsui_3163 0.70 -0.5 3,391,278 - Dsui_3163 0.75 -1.5 3,391,333 + Dsui_3163 0.80 +0.7 3,391,371 + Dsui_3163 0.83 +0.5 3,391,389 + Dsui_3163 0.84 +0.2 3,391,421 - Dsui_3163 0.87 -0.5
Or see this region's nucleotide sequence