Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3091 and Dsui_3092 are separated by 122 nucleotides Dsui_3092 and Dsui_3093 are separated by 318 nucleotides Dsui_3093 and Dsui_3094 are separated by 136 nucleotides
Dsui_3091: Dsui_3091 - integral membrane protein, TerC family, at 3,308,780 to 3,309,745
_3091
Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706
_3092
Dsui_3093: Dsui_3093 - hypothetical protein, at 3,312,025 to 3,312,339
_3093
Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132
_3094
Position (kb)
3309
3310
3311
3312 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3308.903 kb on + strand, within Dsui_3091 at 3308.903 kb on + strand, within Dsui_3091 at 3308.911 kb on - strand at 3308.925 kb on + strand, within Dsui_3091 at 3308.931 kb on + strand, within Dsui_3091 at 3309.061 kb on + strand, within Dsui_3091 at 3309.115 kb on + strand, within Dsui_3091 at 3309.147 kb on + strand, within Dsui_3091 at 3309.212 kb on - strand at 3309.235 kb on + strand, within Dsui_3091 at 3309.489 kb on - strand at 3309.538 kb on - strand, within Dsui_3091 at 3309.592 kb on - strand, within Dsui_3091 at 3309.612 kb on + strand, within Dsui_3091 at 3309.823 kb on + strand at 3310.041 kb on + strand at 3310.130 kb on - strand, within Dsui_3092 at 3310.162 kb on + strand, within Dsui_3092 at 3310.504 kb on + strand, within Dsui_3092 at 3310.535 kb on - strand, within Dsui_3092 at 3310.542 kb on - strand, within Dsui_3092 at 3310.574 kb on - strand, within Dsui_3092 at 3310.702 kb on - strand at 3310.796 kb on + strand, within Dsui_3092 at 3310.806 kb on + strand, within Dsui_3092 at 3310.989 kb on - strand, within Dsui_3092 at 3310.989 kb on - strand, within Dsui_3092 at 3311.153 kb on + strand, within Dsui_3092 at 3311.212 kb on + strand at 3311.214 kb on - strand, within Dsui_3092 at 3311.257 kb on - strand, within Dsui_3092 at 3311.269 kb on + strand, within Dsui_3092 at 3311.323 kb on - strand, within Dsui_3092 at 3311.371 kb on - strand, within Dsui_3092 at 3311.450 kb on - strand, within Dsui_3092 at 3311.469 kb on + strand, within Dsui_3092 at 3311.561 kb on + strand at 3311.590 kb on - strand at 3311.615 kb on + strand at 3311.816 kb on - strand at 3311.816 kb on - strand at 3311.854 kb on - strand at 3311.855 kb on - strand at 3311.865 kb on + strand at 3311.865 kb on + strand at 3311.873 kb on - strand at 3311.975 kb on - strand at 3312.020 kb on + strand at 3312.105 kb on + strand, within Dsui_3093 at 3312.137 kb on + strand, within Dsui_3093 at 3312.248 kb on + strand at 3312.276 kb on - strand at 3312.379 kb on - strand at 3312.400 kb on - strand at 3312.450 kb on - strand at 3312.624 kb on + strand at 3312.682 kb on + strand at 3312.683 kb on + strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.705 kb on + strand, within Dsui_3094 at 3312.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,308,903 + Dsui_3091 0.13 -0.1 3,308,903 + Dsui_3091 0.13 -1.1 3,308,911 - -1.0 3,308,925 + Dsui_3091 0.15 -1.0 3,308,931 + Dsui_3091 0.16 +0.3 3,309,061 + Dsui_3091 0.29 +0.9 3,309,115 + Dsui_3091 0.35 -0.6 3,309,147 + Dsui_3091 0.38 +0.6 3,309,212 - +0.6 3,309,235 + Dsui_3091 0.47 -0.9 3,309,489 - +0.6 3,309,538 - Dsui_3091 0.78 -0.3 3,309,592 - Dsui_3091 0.84 +0.6 3,309,612 + Dsui_3091 0.86 -1.4 3,309,823 + +0.6 3,310,041 + -1.4 3,310,130 - Dsui_3092 0.14 -0.4 3,310,162 + Dsui_3092 0.16 +0.0 3,310,504 + Dsui_3092 0.35 -4.4 3,310,535 - Dsui_3092 0.36 +0.6 3,310,542 - Dsui_3092 0.37 -1.0 3,310,574 - Dsui_3092 0.38 -2.4 3,310,702 - +0.6 3,310,796 + Dsui_3092 0.50 -1.4 3,310,806 + Dsui_3092 0.51 -1.7 3,310,989 - Dsui_3092 0.61 -1.7 3,310,989 - Dsui_3092 0.61 -2.4 3,311,153 + Dsui_3092 0.70 -1.2 3,311,212 + -1.0 3,311,214 - Dsui_3092 0.73 -1.0 3,311,257 - Dsui_3092 0.76 -0.4 3,311,269 + Dsui_3092 0.76 -2.7 3,311,323 - Dsui_3092 0.79 -1.4 3,311,371 - Dsui_3092 0.82 -1.0 3,311,450 - Dsui_3092 0.86 -1.4 3,311,469 + Dsui_3092 0.87 -2.0 3,311,561 + +0.6 3,311,590 - -1.7 3,311,615 + -0.5 3,311,816 - -2.7 3,311,816 - +0.6 3,311,854 - -1.4 3,311,855 - +0.6 3,311,865 + +0.6 3,311,865 + +0.6 3,311,873 - +0.6 3,311,975 - -1.4 3,312,020 + +0.6 3,312,105 + Dsui_3093 0.25 +0.6 3,312,137 + Dsui_3093 0.36 +0.6 3,312,248 + +0.6 3,312,276 - -0.4 3,312,379 - +0.6 3,312,400 - -2.0 3,312,450 - -0.4 3,312,624 + +0.6 3,312,682 + +0.6 3,312,683 + Dsui_3094 0.32 -1.0 3,312,685 - Dsui_3094 0.32 -0.4 3,312,685 - Dsui_3094 0.32 -1.4 3,312,705 + Dsui_3094 0.35 +0.6 3,312,705 + +0.6
Or see this region's nucleotide sequence