Strain Fitness in Dechlorosoma suillum PS around Dsui_3055

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3054 and Dsui_3055 are separated by 2 nucleotidesDsui_3055 and Dsui_3056 are separated by 72 nucleotides Dsui_3054: Dsui_3054 - phosphate ABC transporter, permease protein PstA, at 3,268,560 to 3,269,498 _3054 Dsui_3055: Dsui_3055 - phosphate ABC transporter, permease protein PstC, at 3,269,501 to 3,270,475 _3055 Dsui_3056: Dsui_3056 - phosphate binding protein, at 3,270,548 to 3,271,540 _3056 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3268.515 kb on + strandat 3268.523 kb on - strandat 3268.543 kb on - strandat 3268.543 kb on - strandat 3268.625 kb on - strandat 3268.726 kb on - strand, within Dsui_3054at 3268.896 kb on - strand, within Dsui_3054at 3269.035 kb on - strand, within Dsui_3054at 3269.538 kb on + strandat 3270.483 kb on - strandat 3270.535 kb on - strandat 3270.551 kb on + strandat 3270.551 kb on + strandat 3270.551 kb on + strandat 3270.554 kb on - strandat 3270.559 kb on - strandat 3270.559 kb on - strandat 3270.605 kb on - strandat 3270.711 kb on - strand, within Dsui_3056

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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3,268,515 + +0.6
3,268,523 - +0.5
3,268,543 - -0.1
3,268,543 - +0.7
3,268,625 - -3.5
3,268,726 - Dsui_3054 0.18 -3.1
3,268,896 - Dsui_3054 0.36 -4.0
3,269,035 - Dsui_3054 0.51 -3.1
3,269,538 + -0.4
3,270,483 - -0.4
3,270,535 - -0.2
3,270,551 + -0.4
3,270,551 + -0.9
3,270,551 + -0.4
3,270,554 - -0.1
3,270,559 - -0.7
3,270,559 - +1.0
3,270,605 - +0.6
3,270,711 - Dsui_3056 0.16 -2.5

Or see this region's nucleotide sequence