Strain Fitness in Dechlorosoma suillum PS around Dsui_2921

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2920 and Dsui_2921 overlap by 4 nucleotidesDsui_2921 and Dsui_2922 are separated by 18 nucleotides Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239 _2920 Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675 _2921 Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469 _2922 Position (kb) 3122 3123 3124Strain fitness (log2 ratio) -2 -1 0 1at 3121.262 kb on - strandat 3121.267 kb on - strandat 3121.750 kb on + strand, within Dsui_2920at 3121.842 kb on - strandat 3121.880 kb on + strand, within Dsui_2920at 3122.074 kb on - strandat 3122.110 kb on + strandat 3122.123 kb on - strandat 3122.560 kb on + strandat 3122.593 kb on - strandat 3122.596 kb on + strand, within Dsui_2921at 3122.615 kb on - strandat 3122.713 kb on + strand, within Dsui_2921at 3122.716 kb on - strand, within Dsui_2921at 3122.804 kb on - strandat 3122.908 kb on + strandat 3123.106 kb on + strand, within Dsui_2921at 3123.109 kb on - strandat 3123.496 kb on + strand, within Dsui_2921at 3123.797 kb on + strandat 3123.815 kb on + strandat 3123.875 kb on + strand, within Dsui_2922at 3123.899 kb on - strandat 3123.937 kb on - strand, within Dsui_2922at 3124.034 kb on + strand, within Dsui_2922at 3124.056 kb on + strand, within Dsui_2922at 3124.121 kb on + strand, within Dsui_2922at 3124.189 kb on + strand, within Dsui_2922at 3124.256 kb on + strand, within Dsui_2922at 3124.256 kb on + strand, within Dsui_2922at 3124.397 kb on - strandat 3124.431 kb on + strand, within Dsui_2922at 3124.431 kb on + strand, within Dsui_2922at 3124.461 kb on - strandat 3124.549 kb on + strand, within Dsui_2922at 3124.557 kb on - strand, within Dsui_2922at 3124.580 kb on + strandat 3124.655 kb on + strand, within Dsui_2922at 3124.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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3,121,262 - -0.2
3,121,267 - +0.8
3,121,750 + Dsui_2920 0.66 +0.8
3,121,842 - +0.8
3,121,880 + Dsui_2920 0.75 -1.8
3,122,074 - +0.8
3,122,110 + +0.2
3,122,123 - -0.8
3,122,560 + -0.8
3,122,593 - +0.8
3,122,596 + Dsui_2921 0.25 -2.0
3,122,615 - -0.2
3,122,713 + Dsui_2921 0.33 -2.4
3,122,716 - Dsui_2921 0.33 -1.2
3,122,804 - -0.2
3,122,908 + +0.8
3,123,106 + Dsui_2921 0.60 -0.6
3,123,109 - +0.8
3,123,496 + Dsui_2921 0.88 -2.2
3,123,797 + +0.8
3,123,815 + +0.8
3,123,875 + Dsui_2922 0.10 -1.8
3,123,899 - -1.8
3,123,937 - Dsui_2922 0.14 -0.2
3,124,034 + Dsui_2922 0.19 -0.6
3,124,056 + Dsui_2922 0.20 -1.2
3,124,121 + Dsui_2922 0.24 -1.2
3,124,189 + Dsui_2922 0.28 +0.8
3,124,256 + Dsui_2922 0.32 -0.2
3,124,256 + Dsui_2922 0.32 +0.8
3,124,397 - +0.8
3,124,431 + Dsui_2922 0.41 -2.0
3,124,431 + Dsui_2922 0.41 -1.8
3,124,461 - -0.8
3,124,549 + Dsui_2922 0.48 -0.8
3,124,557 - Dsui_2922 0.49 -1.6
3,124,580 + +0.8
3,124,655 + Dsui_2922 0.54 -1.2
3,124,657 - +0.8

Or see this region's nucleotide sequence