Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2856 and Dsui_2857 are separated by 101 nucleotides Dsui_2857 and Dsui_2858 overlap by 8 nucleotides Dsui_2858 and Dsui_2859 are separated by 227 nucleotides
Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568
_2856
Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419
_2857
Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659
_2858
Dsui_2859: Dsui_2859 - hypothetical protein, at 3,048,887 to 3,049,954
_2859
Position (kb)
3047
3048
3049 Strain fitness (log2 ratio)
-2
-1
0
1 at 3046.461 kb on + strand at 3046.518 kb on + strand at 3046.530 kb on + strand at 3046.538 kb on - strand at 3046.538 kb on - strand at 3046.585 kb on - strand at 3046.590 kb on - strand at 3046.590 kb on - strand at 3047.417 kb on - strand at 3048.661 kb on - strand at 3048.661 kb on - strand at 3048.784 kb on - strand at 3048.836 kb on - strand at 3048.873 kb on + strand at 3048.877 kb on + strand at 3048.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 3,046,461 + -0.2 3,046,518 + +0.8 3,046,530 + -0.8 3,046,538 - +0.3 3,046,538 - +0.2 3,046,585 - +0.2 3,046,590 - -0.0 3,046,590 - -1.3 3,047,417 - +1.0 3,048,661 - -1.5 3,048,661 - -0.5 3,048,784 - -1.5 3,048,836 - -0.2 3,048,873 + -1.8 3,048,877 + -0.2 3,048,877 + -0.6
Or see this region's nucleotide sequence