Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2737 and Dsui_2738 overlap by 8 nucleotides Dsui_2738 and Dsui_2739 are separated by 129 nucleotides Dsui_2739 and Dsui_2740 are separated by 24 nucleotides
Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017
_2737
Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537
_2738
Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936
_2739
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Position (kb)
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1 at 2893.027 kb on + strand, within Dsui_2737 at 2893.072 kb on + strand, within Dsui_2737 at 2893.158 kb on - strand, within Dsui_2737 at 2893.164 kb on + strand, within Dsui_2737 at 2893.217 kb on + strand, within Dsui_2737 at 2893.402 kb on - strand at 2893.532 kb on + strand, within Dsui_2737 at 2893.535 kb on - strand, within Dsui_2737 at 2893.552 kb on - strand, within Dsui_2737 at 2893.898 kb on + strand at 2894.086 kb on + strand, within Dsui_2738 at 2894.089 kb on + strand, within Dsui_2738 at 2894.161 kb on - strand, within Dsui_2738 at 2894.350 kb on + strand, within Dsui_2738 at 2894.388 kb on + strand, within Dsui_2738 at 2894.388 kb on - strand, within Dsui_2738 at 2894.491 kb on - strand at 2894.564 kb on + strand at 2894.619 kb on + strand at 2894.651 kb on + strand at 2894.659 kb on - strand at 2894.702 kb on - strand, within Dsui_2739 at 2894.774 kb on - strand, within Dsui_2739 at 2894.837 kb on - strand, within Dsui_2739 at 2894.839 kb on + strand at 2895.004 kb on - strand at 2895.134 kb on - strand, within Dsui_2740 at 2895.151 kb on + strand, within Dsui_2740 at 2895.237 kb on - strand at 2895.293 kb on - strand, within Dsui_2740 at 2895.343 kb on + strand at 2895.441 kb on + strand at 2895.446 kb on + strand, within Dsui_2740 at 2895.494 kb on - strand at 2895.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,893,027 + Dsui_2737 0.66 +0.8 2,893,072 + Dsui_2737 0.67 -2.5 2,893,158 - Dsui_2737 0.70 -1.5 2,893,164 + Dsui_2737 0.71 -0.2 2,893,217 + Dsui_2737 0.72 -1.2 2,893,402 - +0.8 2,893,532 + Dsui_2737 0.83 +0.8 2,893,535 - Dsui_2737 0.83 -1.2 2,893,552 - Dsui_2737 0.84 -0.2 2,893,898 + -1.2 2,894,086 + Dsui_2738 0.14 -0.2 2,894,089 + Dsui_2738 0.15 -2.5 2,894,161 - Dsui_2738 0.29 +0.8 2,894,350 + Dsui_2738 0.64 -0.8 2,894,388 + Dsui_2738 0.72 -0.8 2,894,388 - Dsui_2738 0.72 -0.2 2,894,491 - -2.5 2,894,564 + +0.8 2,894,619 + +0.8 2,894,651 + +0.2 2,894,659 - +0.8 2,894,702 - Dsui_2739 0.13 -0.2 2,894,774 - Dsui_2739 0.40 -0.2 2,894,837 - Dsui_2739 0.63 -0.2 2,894,839 + +0.8 2,895,004 - -0.2 2,895,134 - Dsui_2740 0.23 -1.2 2,895,151 + Dsui_2740 0.26 +0.8 2,895,237 - +0.8 2,895,293 - Dsui_2740 0.45 -0.8 2,895,343 + -0.2 2,895,441 + +0.8 2,895,446 + Dsui_2740 0.66 -1.5 2,895,494 - +0.8 2,895,516 - +0.8
Or see this region's nucleotide sequence