Strain Fitness in Dechlorosoma suillum PS around Dsui_2688

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2687 and Dsui_2688 overlap by 4 nucleotidesDsui_2688 and Dsui_2689 are separated by 28 nucleotidesDsui_2689 and Dsui_2690 overlap by 8 nucleotides Dsui_2687: Dsui_2687 - RIP metalloprotease RseP, at 2,839,251 to 2,840,651 _2687 Dsui_2688: Dsui_2688 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,840,648 to 2,841,832 _2688 Dsui_2689: Dsui_2689 - CDP-diglyceride synthetase, at 2,841,861 to 2,842,694 _2689 Dsui_2690: Dsui_2690 - undecaprenyl diphosphate synthase, at 2,842,687 to 2,843,460 _2690 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2839.651 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.693 kb on - strand, within Dsui_2687at 2840.111 kb on - strand, within Dsui_2687at 2840.266 kb on - strand, within Dsui_2687at 2840.499 kb on - strand, within Dsui_2687at 2840.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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2,839,651 - Dsui_2687 0.29 -4.0
2,839,688 - Dsui_2687 0.31 -2.4
2,839,688 - Dsui_2687 0.31 -3.4
2,839,688 - Dsui_2687 0.31 -3.2
2,839,693 - Dsui_2687 0.32 -1.2
2,840,111 - Dsui_2687 0.61 -3.6
2,840,266 - Dsui_2687 0.72 -4.1
2,840,499 - Dsui_2687 0.89 -3.2
2,840,594 - -2.6

Or see this region's nucleotide sequence