Strain Fitness in Dechlorosoma suillum PS around Dsui_2656

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2654 and Dsui_2655 overlap by 4 nucleotidesDsui_2655 and Dsui_2656 are separated by 13 nucleotidesDsui_2656 and Dsui_2657 are separated by 234 nucleotides Dsui_2654: Dsui_2654 - DNA polymerase III, delta'' subunit, at 2,809,403 to 2,810,428 _2654 Dsui_2655: Dsui_2655 - thymidylate kinase, at 2,810,425 to 2,811,036 _2655 Dsui_2656: Dsui_2656 - conserved hypothetical protein, YceG family, at 2,811,050 to 2,812,045 _2656 Dsui_2657: Dsui_2657 - folate-binding protein YgfZ, at 2,812,280 to 2,813,299 _2657 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -3 -2 -1 0 1at 2811.094 kb on + strandat 2811.250 kb on + strandat 2811.250 kb on - strand, within Dsui_2656at 2811.265 kb on + strand, within Dsui_2656at 2811.273 kb on - strand, within Dsui_2656at 2811.327 kb on + strand, within Dsui_2656at 2811.434 kb on + strand, within Dsui_2656at 2811.446 kb on - strand, within Dsui_2656at 2811.537 kb on - strand, within Dsui_2656at 2811.570 kb on + strandat 2811.658 kb on + strandat 2811.665 kb on - strand, within Dsui_2656at 2811.666 kb on - strand, within Dsui_2656at 2811.711 kb on + strandat 2811.792 kb on - strand, within Dsui_2656at 2811.831 kb on + strand, within Dsui_2656at 2811.917 kb on - strand, within Dsui_2656at 2811.975 kb on - strandat 2812.003 kb on - strandat 2812.070 kb on - strandat 2812.089 kb on - strandat 2812.139 kb on + strandat 2812.154 kb on + strandat 2812.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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2,811,094 + +0.7
2,811,250 + -0.3
2,811,250 - Dsui_2656 0.20 -0.2
2,811,265 + Dsui_2656 0.22 -0.9
2,811,273 - Dsui_2656 0.22 -1.8
2,811,327 + Dsui_2656 0.28 -0.9
2,811,434 + Dsui_2656 0.39 -0.9
2,811,446 - Dsui_2656 0.40 +0.2
2,811,537 - Dsui_2656 0.49 -1.0
2,811,570 + -0.3
2,811,658 + +0.7
2,811,665 - Dsui_2656 0.62 -1.4
2,811,666 - Dsui_2656 0.62 -2.5
2,811,711 + +0.7
2,811,792 - Dsui_2656 0.74 -1.8
2,811,831 + Dsui_2656 0.78 -0.3
2,811,917 - Dsui_2656 0.87 -3.0
2,811,975 - -2.9
2,812,003 - -1.4
2,812,070 - -1.3
2,812,089 - -1.4
2,812,139 + -0.5
2,812,154 + -0.6
2,812,253 - -1.6

Or see this region's nucleotide sequence