Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2595 and Dsui_2596 are separated by 60 nucleotides Dsui_2596 and Dsui_2597 are separated by 32 nucleotides Dsui_2597 and Dsui_2598 are separated by 79 nucleotides
Dsui_2595: Dsui_2595 - type II secretory pathway, pseudopilin PulG, at 2,750,273 to 2,751,646
_2595
Dsui_2596: Dsui_2596 - methyltransferase family protein, at 2,751,707 to 2,752,408
_2596
Dsui_2597: Dsui_2597 - tyrosine recombinase XerD, at 2,752,441 to 2,753,355
_2597
Dsui_2598: Dsui_2598 - hypothetical protein, at 2,753,435 to 2,754,256
_2598
Position (kb)
2752
2753
2754 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2751.458 kb on + strand at 2751.458 kb on + strand, within Dsui_2595 at 2751.524 kb on - strand at 2751.664 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.675 kb on + strand at 2751.707 kb on + strand at 2751.728 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.776 kb on + strand at 2751.784 kb on - strand at 2751.792 kb on - strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.795 kb on + strand, within Dsui_2596 at 2751.803 kb on - strand at 2751.817 kb on + strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.891 kb on - strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.909 kb on + strand, within Dsui_2596 at 2751.922 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.983 kb on + strand, within Dsui_2596 at 2751.992 kb on - strand, within Dsui_2596 at 2752.020 kb on + strand, within Dsui_2596 at 2752.036 kb on + strand, within Dsui_2596 at 2752.041 kb on + strand, within Dsui_2596 at 2752.075 kb on + strand, within Dsui_2596 at 2752.089 kb on - strand, within Dsui_2596 at 2752.134 kb on + strand, within Dsui_2596 at 2752.259 kb on + strand, within Dsui_2596 at 2752.267 kb on - strand, within Dsui_2596 at 2752.360 kb on + strand at 2752.373 kb on + strand at 2752.453 kb on - strand at 2752.459 kb on - strand at 2752.464 kb on - strand at 2752.465 kb on - strand at 2752.497 kb on - strand at 2752.502 kb on - strand at 2752.532 kb on + strand at 2752.548 kb on - strand, within Dsui_2597 at 2752.568 kb on + strand, within Dsui_2597 at 2752.634 kb on + strand, within Dsui_2597 at 2752.761 kb on - strand, within Dsui_2597 at 2752.785 kb on + strand, within Dsui_2597 at 2752.832 kb on - strand, within Dsui_2597 at 2752.859 kb on + strand, within Dsui_2597 at 2752.867 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.889 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.895 kb on - strand, within Dsui_2597 at 2752.911 kb on + strand, within Dsui_2597 at 2752.920 kb on + strand, within Dsui_2597 at 2752.968 kb on + strand, within Dsui_2597 at 2752.983 kb on - strand, within Dsui_2597 at 2753.014 kb on + strand, within Dsui_2597 at 2753.022 kb on - strand, within Dsui_2597 at 2753.134 kb on - strand, within Dsui_2597 at 2753.166 kb on + strand, within Dsui_2597 at 2753.179 kb on - strand, within Dsui_2597 at 2753.454 kb on - strand at 2753.496 kb on + strand at 2753.523 kb on - strand, within Dsui_2598 at 2753.527 kb on + strand, within Dsui_2598 at 2753.581 kb on + strand, within Dsui_2598 at 2753.589 kb on - strand, within Dsui_2598 at 2753.589 kb on - strand, within Dsui_2598 at 2753.595 kb on + strand, within Dsui_2598 at 2753.595 kb on - strand, within Dsui_2598 at 2753.619 kb on + strand, within Dsui_2598 at 2753.637 kb on - strand, within Dsui_2598 at 2753.761 kb on + strand, within Dsui_2598 at 2753.777 kb on + strand, within Dsui_2598 at 2753.785 kb on - strand, within Dsui_2598 at 2753.785 kb on - strand, within Dsui_2598 at 2753.785 kb on - strand, within Dsui_2598 at 2753.818 kb on - strand, within Dsui_2598 at 2753.827 kb on + strand, within Dsui_2598 at 2753.828 kb on - strand, within Dsui_2598 at 2753.863 kb on + strand, within Dsui_2598 at 2753.869 kb on + strand, within Dsui_2598 at 2753.905 kb on + strand, within Dsui_2598 at 2753.905 kb on + strand, within Dsui_2598 at 2753.905 kb on + strand, within Dsui_2598 at 2753.913 kb on - strand, within Dsui_2598 at 2753.913 kb on - strand, within Dsui_2598 at 2753.913 kb on - strand, within Dsui_2598 at 2753.968 kb on + strand, within Dsui_2598 at 2754.094 kb on + strand, within Dsui_2598 at 2754.203 kb on - strand at 2754.215 kb on - strand at 2754.290 kb on + strand at 2754.293 kb on - strand at 2754.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,751,458 + +0.8 2,751,458 + Dsui_2595 0.86 +0.8 2,751,524 - +0.8 2,751,664 + -0.4 2,751,675 + -1.2 2,751,675 + -0.6 2,751,675 + -0.7 2,751,675 + -0.3 2,751,675 + -0.3 2,751,707 + +1.6 2,751,728 + -3.0 2,751,776 + +0.8 2,751,776 + +0.8 2,751,776 + +0.8 2,751,776 + -0.8 2,751,776 + -1.2 2,751,776 + -0.8 2,751,784 - +0.8 2,751,792 - Dsui_2596 0.12 -0.2 2,751,795 + Dsui_2596 0.13 -0.8 2,751,795 + Dsui_2596 0.13 +0.8 2,751,803 - -0.2 2,751,817 + Dsui_2596 0.16 +0.8 2,751,891 - Dsui_2596 0.26 +0.8 2,751,891 - Dsui_2596 0.26 -0.8 2,751,909 + Dsui_2596 0.29 -0.2 2,751,909 + Dsui_2596 0.29 +0.8 2,751,922 + Dsui_2596 0.31 +0.8 2,751,983 + Dsui_2596 0.39 +2.4 2,751,983 + Dsui_2596 0.39 -2.0 2,751,992 - Dsui_2596 0.41 -0.2 2,752,020 + Dsui_2596 0.45 +0.8 2,752,036 + Dsui_2596 0.47 -0.2 2,752,041 + Dsui_2596 0.48 -0.8 2,752,075 + Dsui_2596 0.52 +0.8 2,752,089 - Dsui_2596 0.54 -0.8 2,752,134 + Dsui_2596 0.61 -2.0 2,752,259 + Dsui_2596 0.79 -1.5 2,752,267 - Dsui_2596 0.80 -0.2 2,752,360 + +0.8 2,752,373 + +0.8 2,752,453 - -0.8 2,752,459 - +0.8 2,752,464 - -3.2 2,752,465 - -1.8 2,752,497 - -2.7 2,752,502 - +0.8 2,752,532 + -0.2 2,752,548 - Dsui_2597 0.12 -0.8 2,752,568 + Dsui_2597 0.14 +0.8 2,752,634 + Dsui_2597 0.21 -0.2 2,752,761 - Dsui_2597 0.35 +0.8 2,752,785 + Dsui_2597 0.38 -0.2 2,752,832 - Dsui_2597 0.43 +0.8 2,752,859 + Dsui_2597 0.46 +0.8 2,752,867 - Dsui_2597 0.47 -0.2 2,752,889 - Dsui_2597 0.49 +0.8 2,752,889 - Dsui_2597 0.49 +0.8 2,752,889 - Dsui_2597 0.49 +0.8 2,752,895 - Dsui_2597 0.50 +0.8 2,752,895 - Dsui_2597 0.50 +0.8 2,752,895 - Dsui_2597 0.50 -1.2 2,752,911 + Dsui_2597 0.51 -0.2 2,752,920 + Dsui_2597 0.52 -0.2 2,752,968 + Dsui_2597 0.58 -0.8 2,752,983 - Dsui_2597 0.59 +0.8 2,753,014 + Dsui_2597 0.63 -1.5 2,753,022 - Dsui_2597 0.63 +0.8 2,753,134 - Dsui_2597 0.76 +0.8 2,753,166 + Dsui_2597 0.79 +0.8 2,753,179 - Dsui_2597 0.81 -0.2 2,753,454 - +0.8 2,753,496 + -0.2 2,753,523 - Dsui_2598 0.11 +0.8 2,753,527 + Dsui_2598 0.11 -0.8 2,753,581 + Dsui_2598 0.18 +0.8 2,753,589 - Dsui_2598 0.19 -1.5 2,753,589 - Dsui_2598 0.19 -1.8 2,753,595 + Dsui_2598 0.19 -0.2 2,753,595 - Dsui_2598 0.19 +0.8 2,753,619 + Dsui_2598 0.22 +0.8 2,753,637 - Dsui_2598 0.25 +0.8 2,753,761 + Dsui_2598 0.40 +0.8 2,753,777 + Dsui_2598 0.42 +0.8 2,753,785 - Dsui_2598 0.43 +0.8 2,753,785 - Dsui_2598 0.43 +0.8 2,753,785 - Dsui_2598 0.43 +0.8 2,753,818 - Dsui_2598 0.47 +0.8 2,753,827 + Dsui_2598 0.48 +0.8 2,753,828 - Dsui_2598 0.48 +0.8 2,753,863 + Dsui_2598 0.52 -0.2 2,753,869 + Dsui_2598 0.53 -1.5 2,753,905 + Dsui_2598 0.57 +0.8 2,753,905 + Dsui_2598 0.57 -0.2 2,753,905 + Dsui_2598 0.57 -2.0 2,753,913 - Dsui_2598 0.58 +0.2 2,753,913 - Dsui_2598 0.58 +0.8 2,753,913 - Dsui_2598 0.58 -0.8 2,753,968 + Dsui_2598 0.65 +0.8 2,754,094 + Dsui_2598 0.80 +0.8 2,754,203 - -0.8 2,754,215 - -1.2 2,754,290 + +0.8 2,754,293 - -0.2 2,754,354 + +0.8
Or see this region's nucleotide sequence