Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2537 and Dsui_2538 are separated by 108 nucleotides Dsui_2538 and Dsui_2539 are separated by 153 nucleotides Dsui_2539 and Dsui_2540 are separated by 24 nucleotides
Dsui_2537: Dsui_2537 - poly(R)-hydroxyalkanoic acid synthase, class I, at 2,688,226 to 2,689,965
_2537
Dsui_2538: Dsui_2538 - acetoacetyl-CoA reductase, at 2,690,074 to 2,690,814
_2538
Dsui_2539: Dsui_2539 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,690,968 to 2,691,531
_2539
Dsui_2540: Dsui_2540 - ribosomal protein S12 methylthiotransferase RimO, at 2,691,556 to 2,692,899
_2540
Position (kb)
2690
2691 Strain fitness (log2 ratio)
-1
0
1 at 2690.063 kb on - strand at 2690.134 kb on + strand at 2690.139 kb on + strand at 2690.281 kb on + strand, within Dsui_2538 at 2690.288 kb on - strand, within Dsui_2538 at 2690.288 kb on - strand at 2690.373 kb on + strand, within Dsui_2538 at 2690.380 kb on + strand, within Dsui_2538 at 2690.388 kb on - strand, within Dsui_2538 at 2690.388 kb on - strand, within Dsui_2538 at 2690.397 kb on + strand, within Dsui_2538 at 2690.508 kb on + strand, within Dsui_2538 at 2690.576 kb on - strand at 2690.640 kb on + strand, within Dsui_2538 at 2690.667 kb on + strand, within Dsui_2538 at 2690.675 kb on - strand, within Dsui_2538 at 2690.711 kb on + strand, within Dsui_2538 at 2690.737 kb on + strand, within Dsui_2538 at 2690.742 kb on - strand at 2690.747 kb on + strand at 2690.747 kb on + strand at 2690.811 kb on - strand at 2690.821 kb on + strand at 2690.964 kb on + strand at 2690.994 kb on + strand at 2691.046 kb on - strand, within Dsui_2539 at 2691.280 kb on + strand, within Dsui_2539 at 2691.344 kb on + strand, within Dsui_2539 at 2691.462 kb on - strand, within Dsui_2539 at 2691.550 kb on + strand at 2691.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,690,063 - +0.8 2,690,134 + -0.4 2,690,139 + -1.3 2,690,281 + Dsui_2538 0.28 +0.2 2,690,288 - Dsui_2538 0.29 +0.8 2,690,288 - +0.8 2,690,373 + Dsui_2538 0.40 -0.8 2,690,380 + Dsui_2538 0.41 -0.8 2,690,388 - Dsui_2538 0.42 -0.2 2,690,388 - Dsui_2538 0.42 +0.8 2,690,397 + Dsui_2538 0.44 -1.0 2,690,508 + Dsui_2538 0.59 -0.6 2,690,576 - +0.8 2,690,640 + Dsui_2538 0.76 -0.7 2,690,667 + Dsui_2538 0.80 -1.1 2,690,675 - Dsui_2538 0.81 -1.2 2,690,711 + Dsui_2538 0.86 -1.1 2,690,737 + Dsui_2538 0.89 -0.5 2,690,742 - -0.2 2,690,747 + -0.3 2,690,747 + -0.9 2,690,811 - +0.8 2,690,821 + -0.1 2,690,964 + -0.1 2,690,994 + -0.2 2,691,046 - Dsui_2539 0.14 -0.8 2,691,280 + Dsui_2539 0.55 -0.1 2,691,344 + Dsui_2539 0.67 +0.5 2,691,462 - Dsui_2539 0.88 +0.8 2,691,550 + -0.4 2,691,579 + -0.6
Or see this region's nucleotide sequence