Strain Fitness in Dechlorosoma suillum PS around Dsui_2425

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2423 and Dsui_2424 are separated by 5 nucleotidesDsui_2424 and Dsui_2425 are separated by 39 nucleotidesDsui_2425 and Dsui_2426 are separated by 184 nucleotidesDsui_2426 and Dsui_2427 are separated by 15 nucleotides Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742 _2423 Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906 _2424 Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865 _2425 Dsui_2426: Dsui_2426 - hypothetical protein, at 2,586,050 to 2,586,832 _2426 Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921 _2427 Position (kb) 2583 2584 2585 2586Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2583.857 kb on - strand, within Dsui_2424at 2583.984 kb on + strandat 2584.070 kb on + strandat 2584.091 kb on - strandat 2584.170 kb on - strand, within Dsui_2425at 2584.230 kb on - strand, within Dsui_2425at 2584.332 kb on + strand, within Dsui_2425at 2584.353 kb on - strand, within Dsui_2425at 2584.516 kb on + strand, within Dsui_2425at 2584.532 kb on - strand, within Dsui_2425at 2584.661 kb on - strand, within Dsui_2425at 2584.760 kb on + strandat 2584.766 kb on - strand, within Dsui_2425at 2584.768 kb on - strand, within Dsui_2425at 2585.058 kb on + strandat 2585.096 kb on - strand, within Dsui_2425at 2585.176 kb on + strandat 2585.184 kb on - strand, within Dsui_2425at 2585.221 kb on - strand, within Dsui_2425at 2585.226 kb on - strand, within Dsui_2425at 2585.274 kb on - strand, within Dsui_2425at 2585.378 kb on + strand, within Dsui_2425at 2585.423 kb on + strand, within Dsui_2425at 2585.423 kb on + strand, within Dsui_2425at 2585.423 kb on + strandat 2585.431 kb on - strand, within Dsui_2425at 2585.431 kb on - strand, within Dsui_2425at 2585.476 kb on + strand, within Dsui_2425at 2585.476 kb on + strand, within Dsui_2425at 2585.532 kb on - strand, within Dsui_2425at 2585.574 kb on - strand, within Dsui_2425at 2585.582 kb on - strand, within Dsui_2425at 2585.638 kb on + strandat 2585.696 kb on - strandat 2585.718 kb on + strandat 2585.721 kb on - strandat 2585.747 kb on - strandat 2585.817 kb on - strandat 2585.877 kb on + strandat 2585.877 kb on + strandat 2585.885 kb on - strandat 2585.885 kb on - strandat 2585.897 kb on - strandat 2585.968 kb on - strandat 2585.983 kb on + strandat 2586.032 kb on + strandat 2586.098 kb on - strandat 2586.127 kb on + strandat 2586.231 kb on + strand, within Dsui_2426at 2586.277 kb on + strand, within Dsui_2426at 2586.279 kb on - strand, within Dsui_2426at 2586.280 kb on - strand, within Dsui_2426at 2586.301 kb on - strand, within Dsui_2426at 2586.321 kb on + strand, within Dsui_2426at 2586.329 kb on - strand, within Dsui_2426at 2586.361 kb on + strand, within Dsui_2426at 2586.369 kb on + strandat 2586.369 kb on + strandat 2586.377 kb on - strand, within Dsui_2426at 2586.396 kb on + strand, within Dsui_2426at 2586.510 kb on - strand, within Dsui_2426at 2586.544 kb on - strandat 2586.602 kb on - strand, within Dsui_2426at 2586.629 kb on + strandat 2586.629 kb on + strand, within Dsui_2426

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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2,583,857 - Dsui_2424 0.69 -0.6
2,583,984 + -0.2
2,584,070 + -0.2
2,584,091 - -0.6
2,584,170 - Dsui_2425 0.12 +0.4
2,584,230 - Dsui_2425 0.15 -0.2
2,584,332 + Dsui_2425 0.20 +0.8
2,584,353 - Dsui_2425 0.21 -0.3
2,584,516 + Dsui_2425 0.30 +0.8
2,584,532 - Dsui_2425 0.31 -0.9
2,584,661 - Dsui_2425 0.37 -0.1
2,584,760 + +0.8
2,584,766 - Dsui_2425 0.43 -0.5
2,584,768 - Dsui_2425 0.43 -0.2
2,585,058 + +0.8
2,585,096 - Dsui_2425 0.60 +0.2
2,585,176 + -0.2
2,585,184 - Dsui_2425 0.64 +1.7
2,585,221 - Dsui_2425 0.66 -1.1
2,585,226 - Dsui_2425 0.67 -0.1
2,585,274 - Dsui_2425 0.69 +0.4
2,585,378 + Dsui_2425 0.75 +0.8
2,585,423 + Dsui_2425 0.77 -0.8
2,585,423 + Dsui_2425 0.77 -0.2
2,585,423 + +0.8
2,585,431 - Dsui_2425 0.77 +0.8
2,585,431 - Dsui_2425 0.77 +3.1
2,585,476 + Dsui_2425 0.80 -0.2
2,585,476 + Dsui_2425 0.80 -1.2
2,585,532 - Dsui_2425 0.83 +0.3
2,585,574 - Dsui_2425 0.85 +1.2
2,585,582 - Dsui_2425 0.85 +0.9
2,585,638 + +0.8
2,585,696 - -0.6
2,585,718 + -0.8
2,585,721 - +0.8
2,585,747 - -0.1
2,585,817 - -0.4
2,585,877 + +0.8
2,585,877 + -0.2
2,585,885 - -0.8
2,585,885 - -0.3
2,585,897 - +1.8
2,585,968 - -1.2
2,585,983 + +0.8
2,586,032 + +0.8
2,586,098 - -1.5
2,586,127 + -0.2
2,586,231 + Dsui_2426 0.23 -0.2
2,586,277 + Dsui_2426 0.29 -2.6
2,586,279 - Dsui_2426 0.29 +0.8
2,586,280 - Dsui_2426 0.29 -0.2
2,586,301 - Dsui_2426 0.32 +0.8
2,586,321 + Dsui_2426 0.35 -0.2
2,586,329 - Dsui_2426 0.36 +0.8
2,586,361 + Dsui_2426 0.40 -0.2
2,586,369 + -0.8
2,586,369 + +0.8
2,586,377 - Dsui_2426 0.42 -0.2
2,586,396 + Dsui_2426 0.44 -0.8
2,586,510 - Dsui_2426 0.59 +0.8
2,586,544 - +0.8
2,586,602 - Dsui_2426 0.70 -0.2
2,586,629 + -0.2
2,586,629 + Dsui_2426 0.74 -0.2

Or see this region's nucleotide sequence