Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2393 and Dsui_2394 are separated by 3 nucleotides Dsui_2394 and Dsui_2395 are separated by 19 nucleotides Dsui_2395 and Dsui_2396 overlap by 4 nucleotides
Dsui_2393: Dsui_2393 - uncharacterized domain HDIG-containing protein, at 2,544,588 to 2,545,811
_2393
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112
_2395
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Position (kb)
2545
2546
2547
2548
2549 Strain fitness (log2 ratio)
-2
-1
0
1 at 2544.896 kb on + strand, within Dsui_2393 at 2545.080 kb on + strand, within Dsui_2393 at 2545.309 kb on + strand, within Dsui_2393 at 2545.312 kb on + strand, within Dsui_2393 at 2545.444 kb on - strand at 2545.653 kb on + strand, within Dsui_2393 at 2545.871 kb on - strand at 2545.927 kb on + strand at 2545.970 kb on - strand at 2545.970 kb on - strand at 2545.974 kb on - strand at 2546.012 kb on + strand at 2546.098 kb on + strand at 2546.105 kb on + strand at 2546.438 kb on + strand, within Dsui_2394 at 2546.463 kb on + strand, within Dsui_2394 at 2546.533 kb on - strand at 2546.548 kb on + strand, within Dsui_2394 at 2546.982 kb on + strand, within Dsui_2394 at 2546.993 kb on + strand, within Dsui_2394 at 2547.007 kb on - strand at 2547.060 kb on - strand at 2547.108 kb on + strand, within Dsui_2394 at 2547.108 kb on + strand, within Dsui_2394 at 2547.259 kb on - strand at 2547.329 kb on + strand, within Dsui_2394 at 2547.452 kb on + strand, within Dsui_2394 at 2547.463 kb on - strand, within Dsui_2394 at 2547.503 kb on + strand, within Dsui_2394 at 2547.533 kb on - strand, within Dsui_2394 at 2547.623 kb on + strand, within Dsui_2394 at 2547.652 kb on - strand at 2547.695 kb on - strand at 2547.865 kb on - strand at 2547.882 kb on + strand, within Dsui_2394 at 2547.943 kb on - strand, within Dsui_2394 at 2548.223 kb on + strand, within Dsui_2394 at 2548.341 kb on + strand, within Dsui_2394 at 2548.409 kb on + strand, within Dsui_2394 at 2548.486 kb on - strand at 2548.650 kb on - strand at 2548.712 kb on + strand at 2548.747 kb on - strand at 2548.873 kb on + strand, within Dsui_2395 at 2549.057 kb on + strand, within Dsui_2395 at 2549.060 kb on + strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.068 kb on - strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.143 kb on - strand at 2549.159 kb on - strand at 2549.210 kb on + strand, within Dsui_2396 at 2549.250 kb on - strand at 2549.276 kb on - strand at 2549.335 kb on + strand, within Dsui_2396 at 2549.339 kb on + strand, within Dsui_2396 at 2549.347 kb on - strand at 2549.395 kb on + strand, within Dsui_2396 at 2549.545 kb on + strand, within Dsui_2396 at 2549.586 kb on + strand, within Dsui_2396 at 2549.629 kb on - strand at 2549.646 kb on + strand, within Dsui_2396 at 2549.654 kb on - strand, within Dsui_2396 at 2549.669 kb on - strand, within Dsui_2396
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,544,896 + Dsui_2393 0.25 -0.5 2,545,080 + Dsui_2393 0.40 -0.0 2,545,309 + Dsui_2393 0.59 +0.1 2,545,312 + Dsui_2393 0.59 -0.5 2,545,444 - -0.8 2,545,653 + Dsui_2393 0.87 +0.8 2,545,871 - +0.8 2,545,927 + -0.9 2,545,970 - +0.8 2,545,970 - +0.8 2,545,974 - +0.8 2,546,012 + +0.2 2,546,098 + -0.6 2,546,105 + -0.2 2,546,438 + Dsui_2394 0.21 -0.8 2,546,463 + Dsui_2394 0.22 -0.3 2,546,533 - +0.8 2,546,548 + Dsui_2394 0.25 -0.7 2,546,982 + Dsui_2394 0.39 -0.3 2,546,993 + Dsui_2394 0.40 -0.6 2,547,007 - +0.8 2,547,060 - +0.8 2,547,108 + Dsui_2394 0.44 +0.5 2,547,108 + Dsui_2394 0.44 -0.8 2,547,259 - +0.8 2,547,329 + Dsui_2394 0.51 +0.1 2,547,452 + Dsui_2394 0.55 +1.2 2,547,463 - Dsui_2394 0.56 -1.8 2,547,503 + Dsui_2394 0.57 +0.2 2,547,533 - Dsui_2394 0.58 -0.8 2,547,623 + Dsui_2394 0.61 -0.3 2,547,652 - -0.2 2,547,695 - +0.8 2,547,865 - +0.8 2,547,882 + Dsui_2394 0.70 -0.4 2,547,943 - Dsui_2394 0.72 +0.8 2,548,223 + Dsui_2394 0.81 +0.1 2,548,341 + Dsui_2394 0.85 -0.2 2,548,409 + Dsui_2394 0.88 -0.7 2,548,486 - -1.5 2,548,650 - +0.8 2,548,712 + -0.5 2,548,747 - -0.8 2,548,873 + Dsui_2395 0.25 -0.8 2,549,057 + Dsui_2395 0.82 -0.5 2,549,060 + Dsui_2395 0.83 -0.0 2,549,068 - +0.8 2,549,068 - Dsui_2395 0.86 -1.5 2,549,068 - -0.2 2,549,143 - +0.8 2,549,159 - +0.8 2,549,210 + Dsui_2396 0.12 -0.0 2,549,250 - +0.8 2,549,276 - -0.2 2,549,335 + Dsui_2396 0.27 -0.3 2,549,339 + Dsui_2396 0.27 -0.5 2,549,347 - +0.8 2,549,395 + Dsui_2396 0.34 -0.7 2,549,545 + Dsui_2396 0.52 -0.2 2,549,586 + Dsui_2396 0.57 +0.2 2,549,629 - -0.8 2,549,646 + Dsui_2396 0.64 -0.6 2,549,654 - Dsui_2396 0.65 +0.8 2,549,669 - Dsui_2396 0.66 +0.8
Or see this region's nucleotide sequence