Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2287 and Dsui_2288 are separated by 112 nucleotides Dsui_2288 and Dsui_2289 are separated by 14 nucleotides Dsui_2289 and Dsui_2290 overlap by 8 nucleotides Dsui_2290 and Dsui_2291 overlap by 4 nucleotides
Dsui_2287: Dsui_2287 - aminopeptidase N, at 2,439,993 to 2,442,602
_2287
Dsui_2288: Dsui_2288 - hypothetical protein, at 2,442,715 to 2,443,389
_2288
Dsui_2289: Dsui_2289 - qaraquat-inducible protein B, at 2,443,404 to 2,444,975
_2289
Dsui_2290: Dsui_2290 - putative paraquat-inducible protein A, at 2,444,968 to 2,445,633
_2290
Dsui_2291: Dsui_2291 - putative paraquat-inducible protein A, at 2,445,630 to 2,446,265
_2291
Position (kb)
2443
2444
2445 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2442.422 kb on + strand at 2442.422 kb on + strand at 2442.422 kb on + strand at 2442.453 kb on - strand at 2442.468 kb on + strand at 2442.513 kb on + strand at 2442.521 kb on - strand at 2442.528 kb on + strand at 2442.558 kb on - strand at 2442.911 kb on + strand at 2442.978 kb on + strand, within Dsui_2288 at 2443.131 kb on + strand at 2443.179 kb on + strand, within Dsui_2288 at 2443.408 kb on - strand at 2443.568 kb on - strand, within Dsui_2289 at 2443.596 kb on - strand, within Dsui_2289 at 2443.646 kb on + strand at 2443.782 kb on + strand, within Dsui_2289 at 2443.804 kb on + strand at 2443.805 kb on - strand, within Dsui_2289 at 2443.870 kb on + strand, within Dsui_2289 at 2443.918 kb on + strand, within Dsui_2289 at 2444.007 kb on - strand, within Dsui_2289 at 2444.055 kb on - strand, within Dsui_2289 at 2444.059 kb on - strand at 2444.122 kb on + strand, within Dsui_2289 at 2444.122 kb on + strand at 2444.233 kb on - strand, within Dsui_2289 at 2444.233 kb on - strand, within Dsui_2289 at 2444.233 kb on - strand, within Dsui_2289 at 2444.255 kb on + strand at 2444.836 kb on + strand at 2444.875 kb on - strand at 2444.914 kb on - strand at 2445.119 kb on - strand, within Dsui_2290 at 2445.148 kb on - strand, within Dsui_2290 at 2445.166 kb on - strand, within Dsui_2290 at 2445.189 kb on + strand at 2445.197 kb on - strand, within Dsui_2290 at 2445.221 kb on + strand at 2445.287 kb on - strand, within Dsui_2290 at 2445.323 kb on - strand, within Dsui_2290 at 2445.356 kb on - strand at 2445.829 kb on - strand, within Dsui_2291 at 2445.923 kb on - strand, within Dsui_2291 at 2445.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,442,422 + -0.1 2,442,422 + +0.9 2,442,422 + -2.1 2,442,453 - -0.1 2,442,468 + +2.9 2,442,513 + -0.4 2,442,521 - +0.9 2,442,528 + -2.6 2,442,558 - -0.7 2,442,911 + -0.1 2,442,978 + Dsui_2288 0.39 -0.1 2,443,131 + +0.9 2,443,179 + Dsui_2288 0.69 -0.7 2,443,408 - +0.9 2,443,568 - Dsui_2289 0.10 -1.7 2,443,596 - Dsui_2289 0.12 +0.9 2,443,646 + +0.9 2,443,782 + Dsui_2289 0.24 +0.9 2,443,804 + +0.9 2,443,805 - Dsui_2289 0.26 -0.1 2,443,870 + Dsui_2289 0.30 -2.3 2,443,918 + Dsui_2289 0.33 -0.7 2,444,007 - Dsui_2289 0.38 +0.9 2,444,055 - Dsui_2289 0.41 -1.1 2,444,059 - +0.9 2,444,122 + Dsui_2289 0.46 -0.1 2,444,122 + +0.9 2,444,233 - Dsui_2289 0.53 +0.9 2,444,233 - Dsui_2289 0.53 +0.9 2,444,233 - Dsui_2289 0.53 -1.1 2,444,255 + -0.1 2,444,836 + -0.1 2,444,875 - +0.9 2,444,914 - +0.9 2,445,119 - Dsui_2290 0.23 -1.4 2,445,148 - Dsui_2290 0.27 -0.7 2,445,166 - Dsui_2290 0.30 -2.4 2,445,189 + +0.9 2,445,197 - Dsui_2290 0.34 -0.1 2,445,221 + -0.1 2,445,287 - Dsui_2290 0.48 -0.7 2,445,323 - Dsui_2290 0.53 -0.7 2,445,356 - -0.1 2,445,829 - Dsui_2291 0.31 +0.9 2,445,923 - Dsui_2291 0.46 -0.1 2,445,975 + -0.1
Or see this region's nucleotide sequence