Strain Fitness in Dechlorosoma suillum PS around Dsui_2287

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2285 and Dsui_2286 are separated by 26 nucleotidesDsui_2286 and Dsui_2287 are separated by 157 nucleotidesDsui_2287 and Dsui_2288 are separated by 112 nucleotidesDsui_2288 and Dsui_2289 are separated by 14 nucleotides Dsui_2285: Dsui_2285 - hypothetical protein, at 2,438,199 to 2,439,014 _2285 Dsui_2286: Dsui_2286 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,439,041 to 2,439,835 _2286 Dsui_2287: Dsui_2287 - aminopeptidase N, at 2,439,993 to 2,442,602 _2287 Dsui_2288: Dsui_2288 - hypothetical protein, at 2,442,715 to 2,443,389 _2288 Dsui_2289: Dsui_2289 - qaraquat-inducible protein B, at 2,443,404 to 2,444,975 _2289 Position (kb) 2439 2440 2441 2442 2443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2439.087 kb on - strandat 2439.181 kb on - strand, within Dsui_2286at 2439.197 kb on - strand, within Dsui_2286at 2439.212 kb on - strand, within Dsui_2286at 2439.388 kb on + strandat 2439.483 kb on - strandat 2439.542 kb on + strandat 2439.595 kb on + strand, within Dsui_2286at 2439.837 kb on - strandat 2439.924 kb on + strandat 2439.924 kb on + strandat 2440.015 kb on + strandat 2440.028 kb on + strandat 2440.037 kb on - strandat 2440.068 kb on - strandat 2440.110 kb on + strandat 2440.233 kb on + strandat 2440.255 kb on + strand, within Dsui_2287at 2440.255 kb on + strand, within Dsui_2287at 2440.263 kb on - strand, within Dsui_2287at 2440.354 kb on + strand, within Dsui_2287at 2440.432 kb on + strand, within Dsui_2287at 2440.481 kb on + strand, within Dsui_2287at 2440.515 kb on - strand, within Dsui_2287at 2440.534 kb on + strand, within Dsui_2287at 2440.614 kb on - strand, within Dsui_2287at 2440.838 kb on + strand, within Dsui_2287at 2440.843 kb on + strand, within Dsui_2287at 2440.851 kb on - strandat 2440.945 kb on + strand, within Dsui_2287at 2440.977 kb on - strand, within Dsui_2287at 2441.004 kb on + strand, within Dsui_2287at 2441.056 kb on - strand, within Dsui_2287at 2441.129 kb on + strandat 2441.137 kb on + strand, within Dsui_2287at 2441.137 kb on - strandat 2441.169 kb on - strand, within Dsui_2287at 2441.245 kb on + strand, within Dsui_2287at 2441.250 kb on + strand, within Dsui_2287at 2441.351 kb on - strand, within Dsui_2287at 2441.356 kb on - strand, within Dsui_2287at 2441.392 kb on - strand, within Dsui_2287at 2441.406 kb on - strand, within Dsui_2287at 2441.414 kb on + strand, within Dsui_2287at 2441.421 kb on + strandat 2441.830 kb on + strand, within Dsui_2287at 2441.830 kb on + strand, within Dsui_2287at 2441.883 kb on - strandat 2441.927 kb on + strandat 2441.930 kb on - strandat 2442.001 kb on - strandat 2442.087 kb on - strandat 2442.141 kb on + strand, within Dsui_2287at 2442.191 kb on - strandat 2442.201 kb on - strandat 2442.274 kb on - strandat 2442.422 kb on + strandat 2442.422 kb on + strandat 2442.422 kb on + strandat 2442.453 kb on - strandat 2442.468 kb on + strandat 2442.513 kb on + strandat 2442.521 kb on - strandat 2442.528 kb on + strandat 2442.558 kb on - strandat 2442.911 kb on + strandat 2442.978 kb on + strand, within Dsui_2288at 2443.131 kb on + strandat 2443.179 kb on + strand, within Dsui_2288at 2443.408 kb on - strandat 2443.568 kb on - strand, within Dsui_2289at 2443.596 kb on - strand, within Dsui_2289

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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2,439,087 - +0.9
2,439,181 - Dsui_2286 0.18 -0.1
2,439,197 - Dsui_2286 0.20 +0.9
2,439,212 - Dsui_2286 0.22 -0.1
2,439,388 + +0.9
2,439,483 - +0.9
2,439,542 + +0.9
2,439,595 + Dsui_2286 0.70 -0.7
2,439,837 - +0.9
2,439,924 + -1.4
2,439,924 + -0.7
2,440,015 + +0.9
2,440,028 + -2.4
2,440,037 - +0.9
2,440,068 - +0.9
2,440,110 + -1.1
2,440,233 + -1.4
2,440,255 + Dsui_2287 0.10 -0.7
2,440,255 + Dsui_2287 0.10 -0.7
2,440,263 - Dsui_2287 0.10 -0.1
2,440,354 + Dsui_2287 0.14 +0.1
2,440,432 + Dsui_2287 0.17 -0.1
2,440,481 + Dsui_2287 0.19 +0.9
2,440,515 - Dsui_2287 0.20 +0.9
2,440,534 + Dsui_2287 0.21 +1.5
2,440,614 - Dsui_2287 0.24 -0.1
2,440,838 + Dsui_2287 0.32 -0.7
2,440,843 + Dsui_2287 0.33 -0.7
2,440,851 - +0.9
2,440,945 + Dsui_2287 0.36 +0.9
2,440,977 - Dsui_2287 0.38 -0.1
2,441,004 + Dsui_2287 0.39 -1.7
2,441,056 - Dsui_2287 0.41 -0.4
2,441,129 + +0.9
2,441,137 + Dsui_2287 0.44 +0.9
2,441,137 - +0.9
2,441,169 - Dsui_2287 0.45 +0.9
2,441,245 + Dsui_2287 0.48 -0.7
2,441,250 + Dsui_2287 0.48 -2.3
2,441,351 - Dsui_2287 0.52 -0.1
2,441,356 - Dsui_2287 0.52 -1.1
2,441,392 - Dsui_2287 0.54 +0.9
2,441,406 - Dsui_2287 0.54 -0.7
2,441,414 + Dsui_2287 0.54 +0.3
2,441,421 + +0.9
2,441,830 + Dsui_2287 0.70 +0.7
2,441,830 + Dsui_2287 0.70 +0.2
2,441,883 - -0.1
2,441,927 + +0.9
2,441,930 - +0.9
2,442,001 - -0.1
2,442,087 - +0.9
2,442,141 + Dsui_2287 0.82 +0.9
2,442,191 - +0.9
2,442,201 - -0.1
2,442,274 - +0.9
2,442,422 + -0.1
2,442,422 + +0.9
2,442,422 + -2.1
2,442,453 - -0.1
2,442,468 + +2.9
2,442,513 + -0.4
2,442,521 - +0.9
2,442,528 + -2.6
2,442,558 - -0.7
2,442,911 + -0.1
2,442,978 + Dsui_2288 0.39 -0.1
2,443,131 + +0.9
2,443,179 + Dsui_2288 0.69 -0.7
2,443,408 - +0.9
2,443,568 - Dsui_2289 0.10 -1.7
2,443,596 - Dsui_2289 0.12 +0.9

Or see this region's nucleotide sequence