Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2237 and Dsui_2238 are separated by 47 nucleotides Dsui_2238 and Dsui_2239 are separated by 459 nucleotides
Dsui_2237: Dsui_2237 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,380,161 to 2,381,129
_2237
Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739
_2238
Dsui_2239: Dsui_2239 - tRNA (uracil-5-)-methyltransferase, at 2,383,199 to 2,384,287
_2239
Position (kb)
2381
2382
2383 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2380.192 kb on + strand at 2380.198 kb on + strand at 2380.206 kb on - strand at 2380.316 kb on + strand, within Dsui_2237 at 2380.334 kb on - strand, within Dsui_2237 at 2380.421 kb on - strand, within Dsui_2237 at 2380.441 kb on - strand, within Dsui_2237 at 2380.479 kb on + strand at 2380.493 kb on - strand, within Dsui_2237 at 2380.520 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.552 kb on - strand at 2380.677 kb on - strand, within Dsui_2237 at 2380.724 kb on + strand at 2380.810 kb on + strand at 2380.835 kb on + strand, within Dsui_2237 at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.854 kb on - strand, within Dsui_2237 at 2380.944 kb on - strand, within Dsui_2237 at 2380.962 kb on + strand at 2381.156 kb on - strand at 2381.191 kb on - strand at 2381.301 kb on + strand at 2381.309 kb on - strand at 2381.408 kb on + strand, within Dsui_2238 at 2381.461 kb on + strand at 2381.487 kb on + strand at 2381.545 kb on + strand, within Dsui_2238 at 2381.564 kb on + strand at 2381.564 kb on + strand at 2381.643 kb on - strand, within Dsui_2238 at 2381.664 kb on - strand at 2381.665 kb on + strand at 2381.782 kb on + strand at 2381.937 kb on + strand at 2382.002 kb on + strand at 2382.327 kb on + strand, within Dsui_2238 at 2382.382 kb on + strand at 2382.412 kb on + strand, within Dsui_2238 at 2382.527 kb on - strand at 2382.531 kb on - strand, within Dsui_2238 at 2382.562 kb on + strand at 2382.782 kb on - strand at 2382.936 kb on + strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.038 kb on - strand at 2383.157 kb on - strand at 2383.221 kb on - strand at 2383.350 kb on - strand, within Dsui_2239 at 2383.356 kb on - strand, within Dsui_2239 at 2383.373 kb on - strand, within Dsui_2239 at 2383.475 kb on + strand at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.515 kb on + strand at 2383.523 kb on - strand, within Dsui_2239
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,380,192 + +0.9 2,380,198 + -0.1 2,380,206 - -1.9 2,380,316 + Dsui_2237 0.16 +0.9 2,380,334 - Dsui_2237 0.18 -1.4 2,380,421 - Dsui_2237 0.27 -1.7 2,380,441 - Dsui_2237 0.29 -2.6 2,380,479 + -0.1 2,380,493 - Dsui_2237 0.34 -0.1 2,380,520 - Dsui_2237 0.37 -1.4 2,380,542 - Dsui_2237 0.39 -2.6 2,380,542 - Dsui_2237 0.39 +0.9 2,380,542 - Dsui_2237 0.39 -2.1 2,380,552 - +0.9 2,380,677 - Dsui_2237 0.53 +0.9 2,380,724 + -0.7 2,380,810 + -0.1 2,380,835 + Dsui_2237 0.70 -1.9 2,380,835 + +0.9 2,380,835 + -0.1 2,380,835 + +0.9 2,380,854 - Dsui_2237 0.72 +0.9 2,380,944 - Dsui_2237 0.81 +0.9 2,380,962 + -0.7 2,381,156 - +1.1 2,381,191 - -1.7 2,381,301 + +0.9 2,381,309 - -0.1 2,381,408 + Dsui_2238 0.15 -2.3 2,381,461 + -0.1 2,381,487 + +0.9 2,381,545 + Dsui_2238 0.24 -1.4 2,381,564 + -0.1 2,381,564 + -0.7 2,381,643 - Dsui_2238 0.30 -0.2 2,381,664 - +0.9 2,381,665 + -0.7 2,381,782 + -0.1 2,381,937 + +0.9 2,382,002 + +0.9 2,382,327 + Dsui_2238 0.74 -1.4 2,382,382 + +0.9 2,382,412 + Dsui_2238 0.79 -0.1 2,382,527 - +0.9 2,382,531 - Dsui_2238 0.87 -1.1 2,382,562 + +0.9 2,382,782 - -0.1 2,382,936 + -0.1 2,383,038 - -1.1 2,383,038 - -1.1 2,383,038 - +0.9 2,383,157 - -0.5 2,383,221 - -3.5 2,383,350 - Dsui_2239 0.14 -2.0 2,383,356 - Dsui_2239 0.14 +1.5 2,383,373 - Dsui_2239 0.16 +0.3 2,383,475 + +0.9 2,383,483 - Dsui_2239 0.26 -0.7 2,383,483 - Dsui_2239 0.26 -0.5 2,383,483 - Dsui_2239 0.26 -1.8 2,383,515 + +0.9 2,383,523 - Dsui_2239 0.30 +1.0
Or see this region's nucleotide sequence