Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2236 and Dsui_2237 overlap by 4 nucleotides Dsui_2237 and Dsui_2238 are separated by 47 nucleotides
Dsui_2236: Dsui_2236 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,379,178 to 2,380,164
_2236
Dsui_2237: Dsui_2237 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,380,161 to 2,381,129
_2237
Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739
_2238
Position (kb)
2380
2381
2382 Strain fitness (log2 ratio)
-2
-1
0
1 at 2379.207 kb on - strand at 2379.253 kb on + strand at 2379.253 kb on + strand at 2379.261 kb on - strand at 2379.262 kb on - strand at 2379.264 kb on + strand at 2379.274 kb on - strand at 2379.284 kb on - strand, within Dsui_2236 at 2379.289 kb on - strand, within Dsui_2236 at 2379.343 kb on - strand at 2379.373 kb on + strand at 2379.658 kb on + strand at 2379.821 kb on + strand at 2379.854 kb on - strand at 2379.970 kb on + strand at 2380.082 kb on - strand at 2380.192 kb on + strand at 2380.198 kb on + strand at 2380.206 kb on - strand at 2380.316 kb on + strand, within Dsui_2237 at 2380.334 kb on - strand, within Dsui_2237 at 2380.421 kb on - strand, within Dsui_2237 at 2380.441 kb on - strand, within Dsui_2237 at 2380.479 kb on + strand at 2380.493 kb on - strand, within Dsui_2237 at 2380.520 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.552 kb on - strand at 2380.677 kb on - strand, within Dsui_2237 at 2380.724 kb on + strand at 2380.810 kb on + strand at 2380.835 kb on + strand, within Dsui_2237 at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.854 kb on - strand, within Dsui_2237 at 2380.944 kb on - strand, within Dsui_2237 at 2380.962 kb on + strand at 2381.156 kb on - strand at 2381.191 kb on - strand at 2381.301 kb on + strand at 2381.309 kb on - strand at 2381.408 kb on + strand, within Dsui_2238 at 2381.461 kb on + strand at 2381.487 kb on + strand at 2381.545 kb on + strand, within Dsui_2238 at 2381.564 kb on + strand at 2381.564 kb on + strand at 2381.643 kb on - strand, within Dsui_2238 at 2381.664 kb on - strand at 2381.665 kb on + strand at 2381.782 kb on + strand at 2381.937 kb on + strand at 2382.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,379,207 - -0.7 2,379,253 + -1.7 2,379,253 + +0.9 2,379,261 - -1.9 2,379,262 - -0.7 2,379,264 + -1.1 2,379,274 - -0.7 2,379,284 - Dsui_2236 0.11 -0.1 2,379,289 - Dsui_2236 0.11 -0.7 2,379,343 - +0.9 2,379,373 + +0.9 2,379,658 + +0.9 2,379,821 + +0.9 2,379,854 - +0.9 2,379,970 + -0.1 2,380,082 - +0.9 2,380,192 + +0.9 2,380,198 + -0.1 2,380,206 - -1.9 2,380,316 + Dsui_2237 0.16 +0.9 2,380,334 - Dsui_2237 0.18 -1.4 2,380,421 - Dsui_2237 0.27 -1.7 2,380,441 - Dsui_2237 0.29 -2.6 2,380,479 + -0.1 2,380,493 - Dsui_2237 0.34 -0.1 2,380,520 - Dsui_2237 0.37 -1.4 2,380,542 - Dsui_2237 0.39 -2.6 2,380,542 - Dsui_2237 0.39 +0.9 2,380,542 - Dsui_2237 0.39 -2.1 2,380,552 - +0.9 2,380,677 - Dsui_2237 0.53 +0.9 2,380,724 + -0.7 2,380,810 + -0.1 2,380,835 + Dsui_2237 0.70 -1.9 2,380,835 + +0.9 2,380,835 + -0.1 2,380,835 + +0.9 2,380,854 - Dsui_2237 0.72 +0.9 2,380,944 - Dsui_2237 0.81 +0.9 2,380,962 + -0.7 2,381,156 - +1.1 2,381,191 - -1.7 2,381,301 + +0.9 2,381,309 - -0.1 2,381,408 + Dsui_2238 0.15 -2.3 2,381,461 + -0.1 2,381,487 + +0.9 2,381,545 + Dsui_2238 0.24 -1.4 2,381,564 + -0.1 2,381,564 + -0.7 2,381,643 - Dsui_2238 0.30 -0.2 2,381,664 - +0.9 2,381,665 + -0.7 2,381,782 + -0.1 2,381,937 + +0.9 2,382,002 + +0.9
Or see this region's nucleotide sequence