Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2046 and Dsui_2047 are separated by 168 nucleotides Dsui_2047 and Dsui_2048 are separated by 64 nucleotides
Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848
_2046
Dsui_2047: Dsui_2047 - chromate transporter, chromate ion transporter family, at 2,167,017 to 2,168,399
_2047
Dsui_2048: Dsui_2048 - ATPase component of ABC transporters with duplicated ATPase domain, at 2,168,464 to 2,170,146
_2048
Position (kb)
2167
2168
2169 Strain fitness (log2 ratio)
-2
-1
0
1 at 2166.141 kb on - strand, within Dsui_2046 at 2166.174 kb on + strand, within Dsui_2046 at 2166.192 kb on + strand, within Dsui_2046 at 2166.361 kb on + strand at 2166.454 kb on + strand at 2166.505 kb on - strand, within Dsui_2046 at 2166.505 kb on - strand, within Dsui_2046 at 2166.535 kb on + strand at 2166.570 kb on + strand, within Dsui_2046 at 2166.573 kb on - strand, within Dsui_2046 at 2166.751 kb on - strand at 2166.786 kb on - strand at 2166.786 kb on - strand at 2167.001 kb on + strand at 2167.021 kb on - strand at 2167.222 kb on + strand, within Dsui_2047 at 2167.302 kb on - strand at 2167.369 kb on + strand at 2167.377 kb on - strand at 2167.412 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand at 2167.479 kb on - strand at 2167.570 kb on + strand, within Dsui_2047 at 2167.736 kb on + strand, within Dsui_2047 at 2167.859 kb on + strand at 2167.861 kb on + strand, within Dsui_2047 at 2167.882 kb on - strand at 2167.970 kb on - strand at 2168.079 kb on + strand, within Dsui_2047 at 2168.079 kb on + strand at 2168.125 kb on - strand at 2168.190 kb on - strand at 2168.199 kb on - strand, within Dsui_2047 at 2168.211 kb on - strand at 2168.302 kb on + strand at 2168.396 kb on + strand at 2168.667 kb on + strand, within Dsui_2048 at 2168.672 kb on + strand, within Dsui_2048 at 2168.741 kb on - strand, within Dsui_2048 at 2168.763 kb on + strand, within Dsui_2048 at 2168.771 kb on - strand, within Dsui_2048 at 2168.990 kb on - strand, within Dsui_2048 at 2168.996 kb on + strand, within Dsui_2048 at 2169.047 kb on + strand, within Dsui_2048 at 2169.057 kb on + strand, within Dsui_2048 at 2169.067 kb on + strand, within Dsui_2048 at 2169.070 kb on - strand, within Dsui_2048 at 2169.215 kb on + strand, within Dsui_2048 at 2169.226 kb on + strand at 2169.273 kb on - strand, within Dsui_2048 at 2169.302 kb on + strand, within Dsui_2048 at 2169.302 kb on + strand, within Dsui_2048 at 2169.352 kb on - strand, within Dsui_2048 at 2169.364 kb on + strand, within Dsui_2048 at 2169.370 kb on - strand, within Dsui_2048 at 2169.372 kb on - strand, within Dsui_2048
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,166,141 - Dsui_2046 0.58 -1.1 2,166,174 + Dsui_2046 0.60 -2.5 2,166,192 + Dsui_2046 0.61 -0.1 2,166,361 + +0.9 2,166,454 + +0.9 2,166,505 - Dsui_2046 0.80 +0.9 2,166,505 - Dsui_2046 0.80 -0.6 2,166,535 + -0.1 2,166,570 + Dsui_2046 0.83 +0.9 2,166,573 - Dsui_2046 0.84 +0.9 2,166,751 - +0.9 2,166,786 - +0.9 2,166,786 - -0.6 2,167,001 + +0.9 2,167,021 - +0.9 2,167,222 + Dsui_2047 0.15 -1.1 2,167,302 - +0.9 2,167,369 + +0.9 2,167,377 - +0.9 2,167,412 + Dsui_2047 0.29 -1.1 2,167,471 + Dsui_2047 0.33 -1.1 2,167,471 + +0.9 2,167,479 - -0.1 2,167,570 + Dsui_2047 0.40 -1.4 2,167,736 + Dsui_2047 0.52 -0.1 2,167,859 + +0.9 2,167,861 + Dsui_2047 0.61 -0.1 2,167,882 - +0.9 2,167,970 - +0.9 2,168,079 + Dsui_2047 0.77 -0.1 2,168,079 + -0.1 2,168,125 - +0.9 2,168,190 - +0.9 2,168,199 - Dsui_2047 0.85 -0.1 2,168,211 - -0.1 2,168,302 + -1.1 2,168,396 + +0.9 2,168,667 + Dsui_2048 0.12 -0.6 2,168,672 + Dsui_2048 0.12 -1.9 2,168,741 - Dsui_2048 0.16 -0.1 2,168,763 + Dsui_2048 0.18 -1.4 2,168,771 - Dsui_2048 0.18 -0.4 2,168,990 - Dsui_2048 0.31 -1.2 2,168,996 + Dsui_2048 0.32 +0.9 2,169,047 + Dsui_2048 0.35 -0.6 2,169,057 + Dsui_2048 0.35 -0.6 2,169,067 + Dsui_2048 0.36 -0.6 2,169,070 - Dsui_2048 0.36 +0.2 2,169,215 + Dsui_2048 0.45 -0.6 2,169,226 + +0.9 2,169,273 - Dsui_2048 0.48 +0.3 2,169,302 + Dsui_2048 0.50 -1.1 2,169,302 + Dsui_2048 0.50 +0.9 2,169,352 - Dsui_2048 0.53 -0.5 2,169,364 + Dsui_2048 0.53 +0.9 2,169,370 - Dsui_2048 0.54 +1.0 2,169,372 - Dsui_2048 0.54 -0.9
Or see this region's nucleotide sequence