Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2033 and Dsui_2034 are separated by 142 nucleotides Dsui_2034 and Dsui_2035 are separated by 27 nucleotides
Dsui_2033: Dsui_2033 - transcriptional regulator, at 2,153,282 to 2,154,148
_2033
Dsui_2034: Dsui_2034 - DNA gyrase inhibitor, at 2,154,291 to 2,155,157
_2034
Dsui_2035: Dsui_2035 - transcriptional regulator, at 2,155,185 to 2,156,147
_2035
Position (kb)
2154
2155
2156 Strain fitness (log2 ratio)
-2
-1
0
1 at 2153.320 kb on + strand at 2153.328 kb on - strand at 2153.385 kb on - strand, within Dsui_2033 at 2153.462 kb on + strand, within Dsui_2033 at 2153.611 kb on - strand, within Dsui_2033 at 2153.685 kb on - strand, within Dsui_2033 at 2153.845 kb on + strand, within Dsui_2033 at 2153.901 kb on - strand, within Dsui_2033 at 2153.903 kb on + strand at 2153.911 kb on - strand at 2153.999 kb on + strand, within Dsui_2033 at 2154.051 kb on + strand at 2154.102 kb on - strand at 2154.178 kb on - strand at 2154.215 kb on - strand at 2154.261 kb on - strand at 2154.335 kb on + strand at 2154.336 kb on + strand at 2154.344 kb on - strand at 2154.344 kb on - strand at 2154.516 kb on - strand at 2154.529 kb on - strand at 2154.540 kb on + strand, within Dsui_2034 at 2154.591 kb on - strand, within Dsui_2034 at 2154.741 kb on + strand, within Dsui_2034 at 2154.741 kb on - strand at 2154.749 kb on - strand, within Dsui_2034 at 2154.751 kb on - strand at 2154.754 kb on + strand, within Dsui_2034 at 2154.835 kb on + strand, within Dsui_2034 at 2154.854 kb on - strand, within Dsui_2034 at 2154.865 kb on + strand, within Dsui_2034 at 2155.049 kb on - strand at 2155.077 kb on - strand at 2155.090 kb on + strand at 2155.098 kb on - strand at 2155.135 kb on - strand at 2155.159 kb on - strand at 2155.159 kb on - strand at 2155.159 kb on - strand at 2155.318 kb on - strand, within Dsui_2035 at 2155.343 kb on - strand, within Dsui_2035 at 2155.346 kb on + strand, within Dsui_2035 at 2155.401 kb on + strand at 2155.401 kb on + strand, within Dsui_2035 at 2155.409 kb on - strand, within Dsui_2035 at 2155.526 kb on + strand at 2155.530 kb on + strand at 2155.531 kb on + strand at 2155.618 kb on + strand, within Dsui_2035 at 2155.661 kb on + strand at 2155.722 kb on - strand, within Dsui_2035 at 2155.803 kb on - strand, within Dsui_2035 at 2155.969 kb on - strand, within Dsui_2035 at 2155.972 kb on - strand, within Dsui_2035 at 2156.005 kb on - strand, within Dsui_2035 at 2156.011 kb on + strand, within Dsui_2035 at 2156.018 kb on - strand, within Dsui_2035 at 2156.018 kb on - strand, within Dsui_2035 at 2156.019 kb on - strand, within Dsui_2035 at 2156.119 kb on - strand at 2156.138 kb on - strand at 2156.149 kb on - strand at 2156.150 kb on - strand at 2156.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 2,153,320 + -0.6 2,153,328 - -1.6 2,153,385 - Dsui_2033 0.12 -1.8 2,153,462 + Dsui_2033 0.21 -0.6 2,153,611 - Dsui_2033 0.38 -1.8 2,153,685 - Dsui_2033 0.46 -1.6 2,153,845 + Dsui_2033 0.65 -1.6 2,153,901 - Dsui_2033 0.71 -0.6 2,153,903 + +1.0 2,153,911 - -0.0 2,153,999 + Dsui_2033 0.83 -0.0 2,154,051 + +1.0 2,154,102 - -0.0 2,154,178 - +1.0 2,154,215 - +1.0 2,154,261 - +1.0 2,154,335 + +1.0 2,154,336 + +1.0 2,154,344 - -0.6 2,154,344 - -0.6 2,154,516 - +1.0 2,154,529 - +1.0 2,154,540 + Dsui_2034 0.29 -1.6 2,154,591 - Dsui_2034 0.35 -1.6 2,154,741 + Dsui_2034 0.52 -0.0 2,154,741 - +1.0 2,154,749 - Dsui_2034 0.53 -0.6 2,154,751 - +1.0 2,154,754 + Dsui_2034 0.53 +1.0 2,154,835 + Dsui_2034 0.63 -1.0 2,154,854 - Dsui_2034 0.65 +1.0 2,154,865 + Dsui_2034 0.66 -0.0 2,155,049 - +1.0 2,155,077 - -0.6 2,155,090 + -0.6 2,155,098 - +1.0 2,155,135 - +1.0 2,155,159 - +1.0 2,155,159 - -0.0 2,155,159 - -0.0 2,155,318 - Dsui_2035 0.14 -0.0 2,155,343 - Dsui_2035 0.16 -0.3 2,155,346 + Dsui_2035 0.17 -0.6 2,155,401 + +1.0 2,155,401 + Dsui_2035 0.22 -0.0 2,155,409 - Dsui_2035 0.23 +1.4 2,155,526 + +1.0 2,155,530 + +1.0 2,155,531 + +1.0 2,155,618 + Dsui_2035 0.45 -0.0 2,155,661 + -0.0 2,155,722 - Dsui_2035 0.56 -0.0 2,155,803 - Dsui_2035 0.64 -0.6 2,155,969 - Dsui_2035 0.81 -0.6 2,155,972 - Dsui_2035 0.82 -0.0 2,156,005 - Dsui_2035 0.85 -1.8 2,156,011 + Dsui_2035 0.86 -0.6 2,156,018 - Dsui_2035 0.87 -1.0 2,156,018 - Dsui_2035 0.87 +1.5 2,156,019 - Dsui_2035 0.87 -0.0 2,156,119 - -0.0 2,156,138 - -0.0 2,156,149 - -1.8 2,156,150 - -0.0 2,156,154 + -2.0
Or see this region's nucleotide sequence