Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1887 and Dsui_1888 overlap by 17 nucleotides Dsui_1888 and Dsui_1889 are separated by 1 nucleotides Dsui_1889 and Dsui_1890 overlap by 4 nucleotides
Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896
_1887
Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743
_1888
Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068
_1889
Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605
_1890
Position (kb)
1988
1989
1990 Strain fitness (log2 ratio)
-1
0
1
2 at 1987.810 kb on + strand at 1987.838 kb on - strand at 1987.902 kb on - strand at 1987.935 kb on - strand at 1988.129 kb on - strand, within Dsui_1888 at 1988.160 kb on + strand at 1988.177 kb on + strand at 1988.184 kb on - strand, within Dsui_1888 at 1988.438 kb on + strand, within Dsui_1888 at 1988.440 kb on - strand, within Dsui_1888 at 1988.776 kb on + strand at 1988.794 kb on - strand, within Dsui_1889 at 1989.230 kb on + strand at 1989.245 kb on - strand at 1989.365 kb on + strand, within Dsui_1890 at 1989.395 kb on - strand, within Dsui_1890 at 1989.532 kb on + strand, within Dsui_1890 at 1989.661 kb on + strand, within Dsui_1890 at 1989.864 kb on - strand, within Dsui_1890 at 1989.995 kb on - strand, within Dsui_1890 at 1989.995 kb on - strand, within Dsui_1890 at 1990.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,987,810 + +0.9 1,987,838 - -0.7 1,987,902 - +0.9 1,987,935 - +0.9 1,988,129 - Dsui_1888 0.29 -0.7 1,988,160 + +1.9 1,988,177 + +0.9 1,988,184 - Dsui_1888 0.35 -1.7 1,988,438 + Dsui_1888 0.65 -0.7 1,988,440 - Dsui_1888 0.65 -0.7 1,988,776 + +0.9 1,988,794 - Dsui_1889 0.15 -0.7 1,989,230 + +0.9 1,989,245 - -0.7 1,989,365 + Dsui_1890 0.12 +0.9 1,989,395 - Dsui_1890 0.13 -1.4 1,989,532 + Dsui_1890 0.18 -1.1 1,989,661 + Dsui_1890 0.23 -1.1 1,989,864 - Dsui_1890 0.31 +0.0 1,989,995 - Dsui_1890 0.37 +0.9 1,989,995 - Dsui_1890 0.37 +0.9 1,990,061 + -0.1
Or see this region's nucleotide sequence