Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1868 and Dsui_1869 are separated by 322 nucleotides Dsui_1869 and Dsui_1870 are separated by 130 nucleotides
Dsui_1868: Dsui_1868 - HD-GYP domain-containing protein, at 1,964,363 to 1,965,607
_1868
Dsui_1869: Dsui_1869 - hypothetical protein, at 1,965,930 to 1,966,208
_1869
Dsui_1870: Dsui_1870 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 1,966,339 to 1,967,841
_1870
Position (kb)
1965
1966
1967 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1964.940 kb on + strand, within Dsui_1868 at 1964.948 kb on - strand at 1964.985 kb on - strand, within Dsui_1868 at 1965.020 kb on - strand, within Dsui_1868 at 1965.024 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.085 kb on + strand, within Dsui_1868 at 1965.200 kb on + strand, within Dsui_1868 at 1965.233 kb on + strand, within Dsui_1868 at 1965.268 kb on + strand, within Dsui_1868 at 1965.277 kb on - strand, within Dsui_1868 at 1965.392 kb on + strand, within Dsui_1868 at 1965.443 kb on - strand at 1965.708 kb on - strand at 1965.712 kb on + strand at 1965.753 kb on - strand at 1965.872 kb on + strand at 1965.920 kb on + strand at 1965.944 kb on + strand at 1965.961 kb on + strand, within Dsui_1869 at 1966.004 kb on + strand, within Dsui_1869 at 1966.083 kb on + strand, within Dsui_1869 at 1966.113 kb on + strand, within Dsui_1869 at 1966.349 kb on + strand at 1966.349 kb on + strand at 1966.432 kb on - strand at 1966.436 kb on + strand at 1966.459 kb on + strand at 1966.468 kb on + strand at 1966.494 kb on + strand, within Dsui_1870 at 1966.564 kb on + strand, within Dsui_1870 at 1966.686 kb on - strand, within Dsui_1870 at 1966.724 kb on + strand, within Dsui_1870 at 1966.724 kb on + strand at 1966.724 kb on + strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.732 kb on - strand, within Dsui_1870 at 1966.734 kb on + strand, within Dsui_1870 at 1966.872 kb on + strand, within Dsui_1870 at 1966.872 kb on + strand, within Dsui_1870 at 1966.880 kb on - strand, within Dsui_1870 at 1966.884 kb on - strand, within Dsui_1870 at 1967.100 kb on + strand, within Dsui_1870 at 1967.116 kb on - strand, within Dsui_1870 at 1967.197 kb on + strand, within Dsui_1870 at 1967.205 kb on - strand, within Dsui_1870
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,964,940 + Dsui_1868 0.46 -0.1 1,964,948 - +0.9 1,964,985 - Dsui_1868 0.50 +0.9 1,965,020 - Dsui_1868 0.53 +0.9 1,965,024 + Dsui_1868 0.53 -0.0 1,965,085 + Dsui_1868 0.58 -1.1 1,965,085 + Dsui_1868 0.58 -0.4 1,965,200 + Dsui_1868 0.67 -1.0 1,965,233 + Dsui_1868 0.70 -0.5 1,965,268 + Dsui_1868 0.73 -2.3 1,965,277 - Dsui_1868 0.73 -0.1 1,965,392 + Dsui_1868 0.83 -2.5 1,965,443 - -1.1 1,965,708 - -0.2 1,965,712 + -0.3 1,965,753 - +0.8 1,965,872 + +0.9 1,965,920 + -0.1 1,965,944 + -0.5 1,965,961 + Dsui_1869 0.11 -0.1 1,966,004 + Dsui_1869 0.27 -0.1 1,966,083 + Dsui_1869 0.55 -0.2 1,966,113 + Dsui_1869 0.66 +0.5 1,966,349 + -0.2 1,966,349 + +0.3 1,966,432 - +2.2 1,966,436 + +0.7 1,966,459 + -0.9 1,966,468 + +0.8 1,966,494 + Dsui_1870 0.10 -0.3 1,966,564 + Dsui_1870 0.15 -1.3 1,966,686 - Dsui_1870 0.23 -0.7 1,966,724 + Dsui_1870 0.26 -0.7 1,966,724 + +0.9 1,966,724 + Dsui_1870 0.26 -0.1 1,966,732 - Dsui_1870 0.26 -1.1 1,966,732 - Dsui_1870 0.26 -0.6 1,966,732 - Dsui_1870 0.26 -2.6 1,966,734 + Dsui_1870 0.26 -1.7 1,966,872 + Dsui_1870 0.35 -0.1 1,966,872 + Dsui_1870 0.35 -1.5 1,966,880 - Dsui_1870 0.36 -2.7 1,966,884 - Dsui_1870 0.36 +1.4 1,967,100 + Dsui_1870 0.51 -1.5 1,967,116 - Dsui_1870 0.52 -1.9 1,967,197 + Dsui_1870 0.57 +0.9 1,967,205 - Dsui_1870 0.58 -0.4
Or see this region's nucleotide sequence