Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1704 and Dsui_1705 are separated by 30 nucleotides Dsui_1705 and Dsui_1706 are separated by 50 nucleotides
Dsui_1704: Dsui_1704 - flagellar motor stator protein MotA, at 1,790,878 to 1,791,735
_1704
Dsui_1705: Dsui_1705 - flagellar motor protein, at 1,791,766 to 1,792,713
_1705
Dsui_1706: Dsui_1706 - methyl-accepting chemotaxis protein, at 1,792,764 to 1,793,987
_1706
Position (kb)
1791
1792
1793 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1790.778 kb on - strand at 1790.801 kb on + strand at 1790.854 kb on + strand at 1790.861 kb on + strand at 1790.863 kb on + strand at 1791.023 kb on + strand, within Dsui_1704 at 1791.094 kb on - strand, within Dsui_1704 at 1791.106 kb on - strand at 1791.254 kb on + strand, within Dsui_1704 at 1791.273 kb on + strand, within Dsui_1704 at 1791.285 kb on + strand, within Dsui_1704 at 1791.293 kb on + strand, within Dsui_1704 at 1791.359 kb on - strand, within Dsui_1704 at 1791.451 kb on - strand, within Dsui_1704 at 1791.456 kb on - strand, within Dsui_1704 at 1791.550 kb on - strand, within Dsui_1704 at 1791.582 kb on - strand, within Dsui_1704 at 1791.719 kb on - strand at 1791.760 kb on + strand at 1791.768 kb on - strand at 1791.836 kb on - strand at 1792.011 kb on + strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.033 kb on - strand, within Dsui_1705 at 1792.056 kb on + strand, within Dsui_1705 at 1792.218 kb on + strand, within Dsui_1705 at 1792.257 kb on + strand, within Dsui_1705 at 1792.290 kb on + strand, within Dsui_1705 at 1792.290 kb on + strand, within Dsui_1705 at 1792.298 kb on - strand, within Dsui_1705 at 1792.464 kb on + strand, within Dsui_1705 at 1792.483 kb on - strand, within Dsui_1705 at 1792.483 kb on - strand at 1792.512 kb on + strand, within Dsui_1705 at 1792.520 kb on - strand, within Dsui_1705 at 1792.587 kb on - strand, within Dsui_1705 at 1792.686 kb on + strand at 1792.748 kb on + strand at 1792.799 kb on + strand at 1792.800 kb on + strand at 1792.835 kb on + strand at 1792.840 kb on + strand at 1792.845 kb on + strand at 1792.938 kb on + strand, within Dsui_1706 at 1792.959 kb on + strand, within Dsui_1706 at 1793.065 kb on - strand, within Dsui_1706 at 1793.157 kb on - strand, within Dsui_1706 at 1793.241 kb on - strand, within Dsui_1706 at 1793.280 kb on - strand, within Dsui_1706 at 1793.373 kb on - strand, within Dsui_1706 at 1793.619 kb on + strand, within Dsui_1706
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,790,778 - -1.0 1,790,801 + +1.0 1,790,854 + -0.2 1,790,861 + -0.1 1,790,863 + +0.4 1,791,023 + Dsui_1704 0.17 -0.1 1,791,094 - Dsui_1704 0.25 -0.4 1,791,106 - -0.4 1,791,254 + Dsui_1704 0.44 -0.1 1,791,273 + Dsui_1704 0.46 +0.2 1,791,285 + Dsui_1704 0.47 -0.1 1,791,293 + Dsui_1704 0.48 +0.6 1,791,359 - Dsui_1704 0.56 +0.6 1,791,451 - Dsui_1704 0.67 -2.0 1,791,456 - Dsui_1704 0.67 -1.0 1,791,550 - Dsui_1704 0.78 -0.4 1,791,582 - Dsui_1704 0.82 -1.0 1,791,719 - -1.0 1,791,760 + -0.2 1,791,768 - -1.7 1,791,836 - +0.6 1,792,011 + Dsui_1705 0.26 +0.1 1,792,033 - Dsui_1705 0.28 -2.9 1,792,033 - Dsui_1705 0.28 +0.6 1,792,033 - Dsui_1705 0.28 +0.6 1,792,056 + Dsui_1705 0.31 -0.3 1,792,218 + Dsui_1705 0.48 +0.4 1,792,257 + Dsui_1705 0.52 -0.2 1,792,290 + Dsui_1705 0.55 -0.2 1,792,290 + Dsui_1705 0.55 -0.3 1,792,298 - Dsui_1705 0.56 -1.4 1,792,464 + Dsui_1705 0.74 -0.1 1,792,483 - Dsui_1705 0.76 -0.4 1,792,483 - -0.4 1,792,512 + Dsui_1705 0.79 +0.4 1,792,520 - Dsui_1705 0.80 -0.4 1,792,587 - Dsui_1705 0.87 +0.6 1,792,686 + -0.2 1,792,748 + -0.1 1,792,799 + +0.2 1,792,800 + -0.4 1,792,835 + -0.5 1,792,840 + -0.4 1,792,845 + -0.2 1,792,938 + Dsui_1706 0.14 +0.3 1,792,959 + Dsui_1706 0.16 +0.6 1,793,065 - Dsui_1706 0.25 +0.6 1,793,157 - Dsui_1706 0.32 -1.0 1,793,241 - Dsui_1706 0.39 +0.6 1,793,280 - Dsui_1706 0.42 -1.0 1,793,373 - Dsui_1706 0.50 -1.7 1,793,619 + Dsui_1706 0.70 -1.1
Or see this region's nucleotide sequence