Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1639 and Dsui_1640 are separated by 124 nucleotides Dsui_1640 and Dsui_1641 overlap by 4 nucleotides Dsui_1641 and Dsui_1642 are separated by 58 nucleotides
Dsui_1639: Dsui_1639 - putative flavoprotein, at 1,722,224 to 1,722,964
_1639
Dsui_1640: Dsui_1640 - hypothetical protein, at 1,723,089 to 1,723,541
_1640
Dsui_1641: Dsui_1641 - SirA-like protein, at 1,723,538 to 1,723,777
_1641
Dsui_1642: Dsui_1642 - hypothetical protein, at 1,723,836 to 1,725,134
_1642
Position (kb)
1723
1724 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1722.601 kb on - strand, within Dsui_1639 at 1722.615 kb on + strand, within Dsui_1639 at 1722.623 kb on - strand, within Dsui_1639 at 1722.743 kb on + strand, within Dsui_1639 at 1722.968 kb on - strand at 1722.995 kb on + strand at 1723.174 kb on - strand, within Dsui_1640 at 1723.274 kb on + strand, within Dsui_1640 at 1723.282 kb on - strand, within Dsui_1640 at 1723.307 kb on - strand, within Dsui_1640 at 1723.481 kb on - strand, within Dsui_1640 at 1723.505 kb on - strand at 1723.534 kb on + strand at 1723.620 kb on + strand, within Dsui_1641 at 1723.665 kb on + strand, within Dsui_1641 at 1723.687 kb on - strand, within Dsui_1641 at 1723.730 kb on + strand, within Dsui_1641 at 1723.736 kb on - strand, within Dsui_1641 at 1723.743 kb on - strand, within Dsui_1641 at 1723.771 kb on + strand at 1723.864 kb on - strand at 1724.011 kb on - strand, within Dsui_1642 at 1724.105 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.177 kb on + strand, within Dsui_1642 at 1724.185 kb on - strand at 1724.195 kb on - strand at 1724.195 kb on - strand at 1724.200 kb on - strand at 1724.269 kb on - strand, within Dsui_1642 at 1724.339 kb on + strand, within Dsui_1642 at 1724.360 kb on + strand, within Dsui_1642 at 1724.394 kb on - strand at 1724.457 kb on + strand, within Dsui_1642 at 1724.511 kb on + strand, within Dsui_1642 at 1724.680 kb on + strand at 1724.741 kb on - strand at 1724.746 kb on - strand, within Dsui_1642 at 1724.767 kb on + strand, within Dsui_1642
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,722,601 - Dsui_1639 0.51 +0.5 1,722,615 + Dsui_1639 0.53 -0.5 1,722,623 - Dsui_1639 0.54 -1.1 1,722,743 + Dsui_1639 0.70 -0.6 1,722,968 - +0.5 1,722,995 + -0.3 1,723,174 - Dsui_1640 0.19 -0.1 1,723,274 + Dsui_1640 0.41 -1.8 1,723,282 - Dsui_1640 0.43 +0.5 1,723,307 - Dsui_1640 0.48 -1.1 1,723,481 - Dsui_1640 0.87 -1.8 1,723,505 - -1.5 1,723,534 + -0.7 1,723,620 + Dsui_1641 0.34 +0.5 1,723,665 + Dsui_1641 0.53 -3.2 1,723,687 - Dsui_1641 0.62 -1.8 1,723,730 + Dsui_1641 0.80 -4.4 1,723,736 - Dsui_1641 0.82 +0.5 1,723,743 - Dsui_1641 0.85 +0.5 1,723,771 + -0.5 1,723,864 - +0.5 1,724,011 - Dsui_1642 0.13 +0.5 1,724,105 + Dsui_1642 0.21 -1.5 1,724,177 + Dsui_1642 0.26 -1.5 1,724,177 + Dsui_1642 0.26 -1.5 1,724,177 + Dsui_1642 0.26 -1.1 1,724,185 - +0.5 1,724,195 - +0.5 1,724,195 - +0.5 1,724,200 - +0.5 1,724,269 - Dsui_1642 0.33 +0.5 1,724,339 + Dsui_1642 0.39 -0.8 1,724,360 + Dsui_1642 0.40 -0.8 1,724,394 - -0.5 1,724,457 + Dsui_1642 0.48 -1.1 1,724,511 + Dsui_1642 0.52 -0.5 1,724,680 + -0.5 1,724,741 - -0.5 1,724,746 - Dsui_1642 0.70 -1.5 1,724,767 + Dsui_1642 0.72 -0.5
Or see this region's nucleotide sequence